ncRNA ID | novel_tse_miR27 |
Species | Triadica sebifera |
Class | miRNA |
Genome position | NA |
Reference genome | NA |
Source | Predicted |
Length | 18 |
Mature sequence(if miRNA) | 1 - GGAGGGAAGGAGGUCUGA - 18 |
Stem-loop(if miRNA) |
--                                        A                                     C              C                    A                                                       A                  A      CUC  U                    A                                                            G         C        A  A    A                   ACCAAG                                   G                                                                 A C                     U                                                              U                 C                                                                                                                                                                                          C           G                                                                                                A             U                                      A                                                                                                                                                                              A     ACC  G     U      U                U                                     U    UACAGAA      AACAA      AU  ---  AC    UAAAC    GAACAA   A  GCAA   GGAGGGAAGGAGGUCUGAUUUCUUUAACCACUUGAAGUCU CUGCUGACAGUCUGACAGCUUUGGCAUGGAUUGCCUA ACAGGAAAAGAUUG GGUAUGAGCAUGCCUAUUGC CAUGUUGAAGAAAGUUGGCAAAUGGCCGAAUUUUACAACAAUAAGGUUCUUGUAG GUACAGAAGCAAAGACCC AAUCAU   GA UGGGCCAAAGCCAUGAAGGA CUCUAUGUACCAGGGUUGAGGGAUUAUGUCAAGAGUCAUUUUCCCUUGGGUCCAACAUGG GUGUUGCUG CAAAGCAC GA UUCU CCUUAUCUAAAGCUCCUGC      UCCUCCACCCCCUCCACCAGCUUCUCUCUUUAGUG UGAAUCUACUCAACCUUCAUCGUCAAAACCAAAAGAAGGGAUGGCUGCUGUUUUCCAAGAAAUCA C UGAGCAAGUCUGUGACUGCAG UCUUAGAAAGGUCACAGAUGAUAUGAAGACCAAGAACCGUGCAGAUAGAACUGGUGCUGUGA UUCCAGUGGAAAGGAAG CCGUACUAGUUCACCUGCUUUCUCUAAGACUGGACCUCCAAAACUUGAGCUUCAAAUGGGUCGUAAGUGGGUUGUUGAGAAUCAAAUUGGGAGAAAGAAUUUAGUGAUUGAUGACUGUGAUUCAAAACAGUCUGUGUAUAUUUUUGGAUGCAAAGAUUCUGUUUUACAGAUUCAAGGGAAAGUGAA AAUAUAACAGU GACAAAUGUGUGAAAAUGGGAGUCAUAUUUACGGAUGUUGUGGCUGCUUGUGAGAUUGUGAAUUGCAGUGGUGUUGAGGUGCAAUGCCAGGGUUUA CUCCAACAAUAUC GUGGACAACACAGCGGGCUGCCAGUUGUAUUUGAGCAA GAUUCUUUGGGAGCAUCUGUAACGACAGCCAAGUCAAGUGAGAUCAAUGUUUUGGUACCUGGUGCAGAGCCUGAUGGUGAUUGGGUGGAGCAUGCUUUGCCACAACAAUACAUUCAUGUAUUUAAGGAUGGGCGCUUCGAAACUACUCCGGUCUCUCACUCUGGAGGUUAAUUA AUUUU   GC AAAUC GGUUUC AUUUUCUCAUUUUUGC UUCUAGGAUGGCUGAGGGGCGGCUUCAACAUGCAUUU UUUU       AAUUCC     UUGAUU  AU   CG  CGAU     GUGA      GCA CA    G   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| |||||||||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   || ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||       ||||||     ||||||  ||   ||  ||||     ||||      ||| ||   UCUCCCUUCCUCCAGACUAAAGAAAUUGGUGAACUUUAGA GACGACUGUCAGACUGUCGAAACCGUACCUAACGGAU UGUCCUUUUCUAAC CCAUACUCGUACGGAUAACG GUACAACUUCUUUCAACCGUUUACCGGCUUAAAAUGUUGUUAUUCCAAGAGCAUC CAUGUCUUCGUUUCUGGG UUAGUA   CU ACCCGGUUUCGGUACUUCCU GAGAUACAUGGUCCCAACUCCCUAAUACAGUUCUCAGUAAAAGGGAACCCAGGUUGUACC CACGACGAC GUUUCGUG CU AAGA GGGGUAGAUUUCGAGGACG      AGGAGGUGGGGGAGGUGGUCGAAGAGAGAAAUCAC ACUUAGAUGAGUUGGAAGUAGUAGUUUUGGUUUUCUUCCCUACCGACGACAAAAGGUUCUUUAGU G ACUCGUUCAGACACUGACGUC AGAAUCUUUCCAGUGUCUACUAUACUUCUGGUUCUUGGCACGUCUAUCUUGACCACGACACU AAGGUCACCUUUCCUUC GGCAUGAUCAAGUGGACGAAAGAGAUUCUGACCUGGAGGUUUUGAACUCGAAGUUUACCCAGCAUUCACCCAACAACUCUUAGUUUAACCCUCUUUCUUAAAUCACUAACUACUGACACUAAGUUUUGUCAGACACAUAUAAAAACCUACGUUUCUAAGACAAAAUGUCUAAGUUCCCUUUCACUU UUAUAUUGUCA CUGUUUACACGUUUUUACCCUCAGUAUAAAUGCCUACAACACCGACGAACACUCUAACACUUAACGUCACCACAACUCCACGUUACGGUCCCAAAU GAGGUUGUUAUAG CACCUGUUGUGUCGUCCGACGGUCAAUAUAAACUCGUU CUAAGAAACCCUCGUAGACAUUGCUGUCGGUUCAGUUCACUCUAGUUACAAAACCAUGGACCACGUCUCGGACUACCACUAACCCACCUCGUACGAAACGGUGUUGUUAUGUAAGUACAUAAAUUCCUACCUGCGAAGCUUUGAUGAGGUCAGAGAGUGAGACCUCCAAUUAAU UAAAG   CG UUUAG CCAAAG UAAAAGAGUAAAAACG AAGAUCCUACCGACUCCUCGCCGAAGUUGUGUGUAAA AAAA       UUAAGG     AACUAA  UA   GC  GCUA     UACU      UGU GU    A UG                                        C                                     A              A                    C                                                       C                  C      CAA  C                    C                                                            A         C        G  C    C                   ------                                   A                                                                 C A                     C                                                              C                 C                                                                                                                                                                                          A           A                                                                                                C             U                                      C                                                                                                                                                                              G     CAA  G     U      C                C                                     U    -------      -----      GU  AAC  CA    ---UA    -AACAC   -  AACA |
Stem-loop sequence | GGAGGGAAGGAGGUCUGAUUUCUUUAACCACUUGAAGUCUACUGCUGACAGUCUGACAGCUUUGGCAUGGAUUGCCUACACAGGAAAAGAUUGCGGUAUGAGCAUGCCUAUUGCACAUGUUGAAGAAAGUUGGCAAAUGGCCGAAUUUUACAACAAUAAGGUUCUUGUAGAGUACAGAAGCAAAGACCCAAAUCAUCUCGAUUGGGCCAAAGCCAUGAAGGAACUCUAUGUACCAGGGUUGAGGGAUUAUGUCAAGAGUCAUUUUCCCUUGGGUCCAACAUGGGGUGUUGCUGCCAAAGCACAGAAUUCUACCUUAUCUAAAGCUCCUGCACCAAGUCCUCCACCCCCUCCACCAGCUUCUCUCUUUAGUGGUGAAUCUACUCAACCUUCAUCGUCAAAACCAAAAGAAGGGAUGGCUGCUGUUUUCCAAGAAAUCAACCUGAGCAAGUCUGUGACUGCAGUUCUUAGAAAGGUCACAGAUGAUAUGAAGACCAAGAACCGUGCAGAUAGAACUGGUGCUGUGAUUUCCAGUGGAAAGGAAGCCCGUACUAGUUCACCUGCUUUCUCUAAGACUGGACCUCCAAAACUUGAGCUUCAAAUGGGUCGUAAGUGGGUUGUUGAGAAUCAAAUUGGGAGAAAGAAUUUAGUGAUUGAUGACUGUGAUUCAAAACAGUCUGUGUAUAUUUUUGGAUGCAAAGAUUCUGUUUUACAGAUUCAAGGGAAAGUGAACAAUAUAACAGUGGACAAAUGUGUGAAAAUGGGAGUCAUAUUUACGGAUGUUGUGGCUGCUUGUGAGAUUGUGAAUUGCAGUGGUGUUGAGGUGCAAUGCCAGGGUUUAACUCCAACAAUAUCUGUGGACAACACAGCGGGCUGCCAGUUGUAUUUGAGCAAAGAUUCUUUGGGAGCAUCUGUAACGACAGCCAAGUCAAGUGAGAUCAAUGUUUUGGUACCUGGUGCAGAGCCUGAUGGUGAUUGGGUGGAGCAUGCUUUGCCACAACAAUACAUUCAUGUAUUUAAGGAUGGGCGCUUCGAAACUACUCCGGUCUCUCACUCUGGAGGUUAAUUAAAUUUUACCGCGAAAUCUGGUUUCUAUUUUCUCAUUUUUGCUUUCUAGGAUGGCUGAGGGGCGGCUUCAACAUGCAUUUUUUUUUACAGAAAAUUCCAACAAUUGAUUAUAUCGACCGAUUAAACGUGAGAACAAGCAACAGCAAGAACAAUGUGUCACAAUCAUAUAUCGACCGCAAAUUGAAUCAAGGAAUUAAAAUAAAUGUGUGUUGAAGCCGCUCCUCAGCCAUCCUAGAACGCAAAAAUGAGAAAAUCGAAACCUGAUUUGGCAACGAAAUGUAAUUAACCUCCAGAGUGAGAGACUGGAGUAGUUUCGAAGCGUCCAUCCUUAAAUACAUGAAUGUAUUGUUGUGGCAAAGCAUGCUCCACCCAAUCACCAUCAGGCUCUGCACCAGGUACCAAAACAUUGAUCUCACUUGACUUGGCUGUCGUUACAGAUGCUCCCAAAGAAUCCUUGCUCAAAUAUAACUGGCAGCCUGCUGUGUUGUCCACUGAUAUUGUUGGAGCUAAACCCUGGCAUUGCACCUCAACACCACUGCAAUUCACAAUCUCACAAGCAGCCACAACAUCCGUAAAUAUGACUCCCAUUUUUGCACAUUUGUCAACUGUUAUAUUAUUCACUUUCCCUUGAAUCUGUAAAACAGAAUCUUUGCAUCCAAAAAUAUACACAGACUGUUUUGAAUCACAGUCAUCAAUCACUAAAUUCUUUCUCCCAAUUUGAUUCUCAACAACCCACUUACGACCCAUUUGAAGCUCAAGUUUUGGAGGUCCAGUCUUAGAGAAAGCAGGUGAACUAGUACGGCCUUCCUUUCCACUGGAACUCACAGCACCAGUUCUAUCUGCACGGUUCUUGGUCUUCAUAUCAUCUGUGACCUUUCUAAGACCUGCAGUCACAGACUUGCUCAAGCUGAUUUCUUGGAAAACAGCAGCCAUCCCUUCUUUUGGUUUUGAUGAUGAAGGUUGAGUAGAUUCAACACUAAAGAGAGAAGCUGGUGGAGGGGGUGGAGGAGCAGGAGCUUUAGAUGGGGCAGAACUCGGUGCUUUGCCAGCAGCACACCAUGUUGGACCCAAGGGAAAAUGACUCUUGACAUAAUCCCUCAACCCUGGUACAUAGAGCUCCUUCAUGGCUUUGGCCCACUCAACAUGAUUCGGGUCUUUGCUUCUGUACCCUACGAGAACCUUAUUGUUGUAAAAUUCGGCCAUUUGCCAACUUUCUUCAACAUGCGCAAUAGGCAUGCUCAUACCACAAUCUUUUCCUGUAUAGGCAAUCCAUGCCAAAGCUGUCAGACUGUCAGCAGCAGAUUUCAAGUGGUUAAAGAAAUCAGACCUCCUUCCCUCUGU |