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BaseInfo

ncRNA ID novel_tse_miR20
Species Triadica sebifera
Class miRNA
Genome position NA
Reference genome NA
Source Predicted
Length 18
Mature sequence(if miRNA) 912 - GGAGGGAAGGGAGGAGGG - 929
Stem-loop(if miRNA) --                                                                                                                                                                                                                                                                                                                                                                                                                                                                     U    U  GA
  CUCCUCCCUUCCCUCCCUUCUGCAUCUUCAAACAAGAGAAAAACCACCACUGAGGUUGAUGAUGAUGCUGAAGUUAUUUUUAGGACUUGGCUUCGCUCUAAGUUCGAUGAGUUCGUCAGGUUGCUUAUCGAUCUUCUUCUAUCUGUGCAAGCGGAGGAAGCUUUGAGAGAAUUUGUGCUCGAUUCCCUUAUGGAAGUCAUGAAACUCGGUAAUGGAGGAAGAUUUCAUUCGGCUAUAUAUCAUAGAUUACUUCAUAAUAUUGUUCUCUCAGCAACGCCUGUUGAUUUUGUAUUAGAUUUACUUGCUUCCAAGUAUUUCAAGUACAUUGAUAUCCGUUAUUUUACCUACAUUAGCCUUGAAAAACUGGCUAAAACUUUGGAGGAAAAAGAGAACCCUGAUGAUGAUAGUAAGAAUGCAAAUGGAAAUGAUGAGAGCUAUUCAAGGGCAAGCAUG AUCU GU  A
  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
  GAGGAGGGAAGGGAGGGAAGACGUAGAAGUUUGUUCUCUUUUUGGUGGUGACUCCAACUACUACUACGACUUCAAUAAAAAUCCUGAACCGAAGCGAGAUUCAAGCUACUCAAGCAGUCCAACGAAUAGCUAGAAGAAGAUAGACACGUUCGCCUCCUUCGAAACUCUCUUAAACACGAGCUAAGGGAAUACCUUCAGUACUUUGAGCCAUUACCUCCUUCUAAAGUAAGCCGAUAUAUAGUAUCUAAUGAAGUAUUAUAACAAGAGAGUCGUUGCGGACAACUAAAACAUAAUCUAAAUGAACGAAGGUUCAUAAAGUUCAUGUAACUAUAGGCAAUAAAAUGGAUGUAAUCGGAACUUUUUGACCGAUUUUGAAACCUCCUUUUUCUCUUGGGACUACUACUAUCAUUCUUACGUUUACCUUUACUACUCUCGAUAAGUUCCCGUUCGUAC UAGA CA  U
GG                                                                                                                                                                                                                                                                                                                                                                                                                                                                     C    -  GA
Stem-loop sequence CUCCUCCCUUCCCUCCCUUCUGCAUCUUCAAACAAGAGAAAAACCACCACUGAGGUUGAUGAUGAUGCUGAAGUUAUUUUUAGGACUUGGCUUCGCUCUAAGUUCGAUGAGUUCGUCAGGUUGCUUAUCGAUCUUCUUCUAUCUGUGCAAGCGGAGGAAGCUUUGAGAGAAUUUGUGCUCGAUUCCCUUAUGGAAGUCAUGAAACUCGGUAAUGGAGGAAGAUUUCAUUCGGCUAUAUAUCAUAGAUUACUUCAUAAUAUUGUUCUCUCAGCAACGCCUGUUGAUUUUGUAUUAGAUUUACUUGCUUCCAAGUAUUUCAAGUACAUUGAUAUCCGUUAUUUUACCUACAUUAGCCUUGAAAAACUGGCUAAAACUUUGGAGGAAAAAGAGAACCCUGAUGAUGAUAGUAAGAAUGCAAAUGGAAAUGAUGAGAGCUAUUCAAGGGCAAGCAUGUAUCUUGUGAAUAGACAGAUCCAUGCUUGCCCUUGAAUAGCUCUCAUCAUUUCCAUUUGCAUUCUUACUAUCAUCAUCAGGGUUCUCUUUUUCCUCCAAAGUUUUAGCCAGUUUUUCAAGGCUAAUGUAGGUAAAAUAACGGAUAUCAAUGUACUUGAAAUACUUGGAAGCAAGUAAAUCUAAUACAAAAUCAACAGGCGUUGCUGAGAGAACAAUAUUAUGAAGUAAUCUAUGAUAUAUAGCCGAAUGAAAUCUUCCUCCAUUACCGAGUUUCAUGACUUCCAUAAGGGAAUCGAGCACAAAUUCUCUCAAAGCUUCCUCCGCUUGCACAGAUAGAAGAAGAUCGAUAAGCAACCUGACGAACUCAUCGAACUUAGAGCGAAGCCAAGUCCUAAAAAUAACUUCAGCAUCAUCAUCAACCUCAGUGGUGGUUUUUCUCUUGUUUGAAGAUGCAGAAGGGAGGGAAGGGAGGAGGG