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BaseInfo

ncRNA ID	osa-miRf11143-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GAGCUCAGCUCGGGCUUGGU - NA
Stem-loop(if miRNA)	U                  AGCUC    A  UCGGCUCGGCUUGAAUGCCAAACGAGC GGCUCGUGAGC CAGCUCGGGCUUGGUUCG     GCUU GC                           C ||||||||||| ||||||||||||||||||     |||| || CCGAGCGCUCG GUCGAGUCCGAACCGAGC     AAAG UC                           A            -                  -----    -  UUUGCUCGACUUUUACUCCGAACCCGA
Stem-loop sequence	GGCUCGUGAGCUCAGCUCGGGCUUGGUUCGAGCUCGCUUAGCUCGGCUCGGCUUGAAUGCCAAACGAGCCAAGCCCAAGCCUCAUUUUCAGCUCGUUUCUGAAACGAGCCAAGCCUGAGCUGGCUCGCGAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK067469.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   =||||||||||||||||||| targets:1294   GCCAAGCCCGAGCUGAGCUC   1313 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013105E17, full insert sequence	NA	coding protein	psRNATarget
XM_015765231.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   ||||*|*||||||||||||| targets:2919   ACCAUGGCCGAGCUGAGCUC   2938 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352636 (LOC4352636), transcript variant X1, mRNA	uncharacterized LOC4352636(LOC4352636)	coding protein	psRNATarget
XM_015765233.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   ||||*|*||||||||||||| targets:2916   ACCAUGGCCGAGCUGAGCUC   2935 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352636 (LOC4352636), transcript variant X3, mRNA	uncharacterized LOC4352636(LOC4352636)	coding protein	psRNATarget
XM_015765234.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   ||||*|*||||||||||||| targets:2807   ACCAUGGCCGAGCUGAGCUC   2826 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352636 (LOC4352636), transcript variant X4, mRNA	uncharacterized LOC4352636(LOC4352636)	coding protein	psRNATarget
XM_015765235.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   ||||*|*||||||||||||| targets:2804   ACCAUGGCCGAGCUGAGCUC   2823 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352636 (LOC4352636), transcript variant X5, mRNA	uncharacterized LOC4352636(LOC4352636)	coding protein	psRNATarget
XM_015765236.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   ||||*|*||||||||||||| targets:1943   ACCAUGGCCGAGCUGAGCUC   1962 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352636 (LOC4352636), transcript variant X6, mRNA	uncharacterized LOC4352636(LOC4352636)	coding protein	psRNATarget
XM_015765232.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   ||||*|*||||||||||||| targets:1933   ACCAUGGCCGAGCUGAGCUC   1952 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352636 (LOC4352636), transcript variant X2, mRNA	uncharacterized LOC4352636(LOC4352636)	coding protein	psRNATarget
AK108584.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   ||||*|*||||||||||||| targets:402   ACCAUGGCCGAGCUGAGCUC   421 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-146-A09, full insert sequence	NA	coding protein	psRNATarget
XM_015792554.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   =||=||*||||||||||||* targets:144   GCCGAGGCCGAGCUGAGCUG   163 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable anion transporter 1, chloroplastic (LOC4326905), mRNA	probable anion transporter 1, chloroplastic(LOC4326905)	coding protein	psRNATarget
AK100107.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   =||=||*||||||||||||* targets:150   GCCGAGGCCGAGCUGAGCUG   169 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023004N09, full insert sequence	NA	coding protein	psRNATarget
AK067683.1	ncRNA:20   UGGUUCGGGCUCGACUCGAG   1   =||=||*||||||||||||* targets:13   GCCGAGGCCGAGCUGAGCUG   32 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013115G11, full insert sequence	NA	coding protein	psRNATarget