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BaseInfo

ncRNA ID novel_zma_miR15394
Species Zea mays
Class miRNA
Genome position Chr1:24119553-24119655 [-]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 80 - GGUGGAUUUUGACUAGUUGUGGAU - 103
Stem-loop(if miRNA) --                                                 
  GGUGGAUUUUGACUAGUUGUGGAUUUAUUCCCCCUCAAUCCACAUAUCCA
  |||||||||||||||||||||||||||||||||||||||||||||||||C
  CCACCUAAAACUGAUCAACACCUAAAUAAGGGGGAGUUAGGUGUAUAGGU
CU                                                 
Stem-loop sequence GGUGGAUUUUGACUAGUUGUGGAUUUAUUCCCCCUCAAUCCACAUAUCCACUGGAUAUGUGGAUUGAGGGGGAAUAAAUCCACAACUAGUCAAAAUCCACCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008668946.2
ncRNA:24   UAGGUGUUGAUCAGUUUUAGGUGG   1
  |||||=|||*||||||||||||||
targets:2328   AUCCAUAACAAGUCAAAAUCCACC   2351

2.0 PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA NA coding protein psRNATarget
BT035580.1
ncRNA:24   UAGGUGUUGAUCAGUUUUAGGUGG   1
  |||||=|||*||||||||||||||
targets:1216   AUCCAUAACAAGUCAAAAUCCACC   1239

2.0 Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds NA coding protein psRNATarget
NM_001138477.1
ncRNA:24   UAGGUGUUGAUCAGUUUUAGGUGG   1
  |||||=|||*||||||||||||||
targets:1216   AUCCAUAACAAGUCAAAAUCCACC   1239

2.0 Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA NA coding protein psRNATarget
EU941886.1
ncRNA:24   UAGGUGUUGAUCAGUUUUAGGUGG   1
  |||||=|||*||||||||||||||
targets:118   AUCCAUAACAAGUCAAAAUCCACC   141

2.0 Zea mays clone 1471521 mRNA sequence NA coding protein psRNATarget
LQ240934.1
ncRNA:24   UAGGUGUUGAUCAGUUUUAGGUGG   1
  |||||=|||*||||||||||||||
targets:38   AUCCAUAACAAGUCAAAAUCCACC   61

2.0 Sequence 6929 from Patent EP2985353 NA coding protein psRNATarget
HI408804.1
ncRNA:24   UAGGUGUUGAUCAGUUUUAGGUGG   1
  |||||=|||*||||||||||||||
targets:38   AUCCAUAACAAGUCAAAAUCCACC   61

2.0 Sequence 6929 from Patent EP2074227 NA coding protein psRNATarget
JB169265.1
ncRNA:24   UAGGUGUUGAUCAGUUUUAGGUGG   1
  |||||=|||*||||||||||||||
targets:38   AUCCAUAACAAGUCAAAAUCCACC   61

2.0 Sequence 6929 from Patent EP2559767 NA coding protein psRNATarget
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