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BaseInfo

ncRNA ID novel_zma_miR15385
Species Zea mays
Class miRNA
Genome position Chr2:163642031-163642130 [+]
Reference genome RefGen_v4
Source SRR1583943
Length 24
Mature sequence(if miRNA) 77 - GGUCUAUCCUCUUUUUUGUGAGGG - 100
Stem-loop(if miRNA) --              U            C     -   ----     ACAA
  CUCACAAAAAGGAG AUAGGCCCCACC GCAGG CCA    AUAAC    C
  |||||||||||||| |||||||||||| ||||| |||    |||||    U
  GAGUGUUUUUUCUC UAUCUGGGGUGG CGUCU GGU    UAUUG    A
GG              C            A     A   GGUU     CAAA
Stem-loop sequence CUCACAAAAAGGAGUAUAGGCCCCACCCGCAGGCCAAUAACACAACUAAAACGUUAUUUGGUGGAUCUGCAGGUGGGGUCUAUCCUCUUUUUUGUGAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403343.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||||||||||||||
targets:22   CCCUCACAAAAAAGAGGAUAGACC   45

0.0 Sequence 1468 from Patent EP2074227 NA coding protein psRNATarget
JB163804.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||||||||||||||
targets:22   CCCUCACAAAAAAGAGGAUAGACC   45

0.0 Sequence 1468 from Patent EP2559767 NA coding protein psRNATarget
LQ235473.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||||||||||||||
targets:22   CCCUCACAAAAAAGAGGAUAGACC   45

0.0 Sequence 1468 from Patent EP2985353 NA coding protein psRNATarget
EU969856.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:1078   UCCUCACAAAAAAGAGGAUAGACC   1101

0.0 Zea mays clone 336516 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020547635.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:2456   UCCUCACAAAAAAGAGGAUAGACC   2479

0.0 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA NA coding protein psRNATarget
X55314.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||=|||||||||||
targets:924   CCCUCACAAAAAGGAGGAUAGACC   947

1.5 Zea mays A2 gene NA coding protein psRNATarget
XM_020547631.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:3356   UCCUCACAAAAAAGAGGAUAGACC   3379

0.0 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547630.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:3373   UCCUCACAAAAAAGAGGAUAGACC   3396

0.0 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547634.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:4231   UCCUCACAAAAAAGAGGAUAGACC   4254

0.0 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547633.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:4234   UCCUCACAAAAAAGAGGAUAGACC   4257

0.0 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547632.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:4252   UCCUCACAAAAAAGAGGAUAGACC   4275

0.0 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547629.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  =|||||||||||||||||||||||
targets:4254   UCCUCACAAAAAAGAGGAUAGACC   4277

0.0 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545800.1
ncRNA:24   GGGAGUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||*|||||||||||
targets:882   CCCUCACAAAAAUGAGGAUAGACC   905

1.5 PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA NA coding protein psRNATarget
HI406008.1
ncRNA:20   GUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||||||||||
targets:1   CACAAAAAAGAGGAUAGACC   20

0.0 Sequence 4133 from Patent EP2074227 NA coding protein psRNATarget
JB166469.1
ncRNA:20   GUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||||||||||
targets:1   CACAAAAAAGAGGAUAGACC   20

0.0 Sequence 4133 from Patent EP2559767 NA coding protein psRNATarget
LQ238138.1
ncRNA:20   GUGUUUUUUCUCCUAUCUGG   1
  ||||||||||||||||||||
targets:1   CACAAAAAAGAGGAUAGACC   20

0.0 Sequence 4133 from Patent EP2985353 NA coding protein psRNATarget
LQ238191.1
ncRNA:20   GUGUUUUUUCUCCUAUCUGG   1
  ||||||||=|||||||||||
targets:1   CACAAAAAGGAGGAUAGACC   20

1.5 Sequence 4186 from Patent EP2985353 NA coding protein psRNATarget
HI406061.1
ncRNA:20   GUGUUUUUUCUCCUAUCUGG   1
  ||||||||=|||||||||||
targets:1   CACAAAAAGGAGGAUAGACC   20

1.5 Sequence 4186 from Patent EP2074227 NA coding protein psRNATarget
JB166522.1
ncRNA:20   GUGUUUUUUCUCCUAUCUGG   1
  ||||||||=|||||||||||
targets:1   CACAAAAAGGAGGAUAGACC   20

1.5 Sequence 4186 from Patent EP2559767 NA coding protein psRNATarget
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