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BaseInfo

ncRNA ID novel_zma_miR15379
Species Zea mays
Class miRNA
Genome position Chr1:276549621-276549742 [-]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 99 - GAUGGGCGCAUCGGACAGUUCGGU - 122
Stem-loop(if miRNA) --GA   -   -        A         G    CCAC  CACCCAACCGUUAGGGUUCUG
    UGG GCG CAUCGGAC GUUCGGUGC CCAG    GU                     A
    ||| ||| |||||||| ||||||||| ||||    ||                     C
    GCC CGC GUGGUCUG CAGGCCACG GGUU    CA                     G
ACAG   A   U        A         G    -CUA  GUCUCGAGGUUGCCAGUUUUG
Stem-loop sequence GAUGGGCGCAUCGGACAGUUCGGUGCGCCAGCCACGUCACCCAACCGUUAGGGUUCUGACGGUUUUGACCGUUGGAGCUCUGACAUCUUGGGGCACCGGACAGUCUGGUGUCGCACCGGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ057358.1
ncRNA:24   UGGCUUGACAGGCUACGCGGGUAG   1
  |||*=||||||||||||||=||||
targets:225   ACCAGACUGUCCGAUGCGCUCAUC   248

1.5 TSA: Zea mays contig58480, mRNA sequence NA coding protein psRNATarget
EU952213.1
ncRNA:24   UGGCUUGACAGGCUACGCGGGUAG   1
  |=||=|||*||||=||||||||||
targets:315   AUCGGACUCUCCGGUGCGCCCAUC   338

2.5 Zea mays clone 1226497 hypothetical protein mRNA, complete cds NA coding protein psRNATarget