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BaseInfo

ncRNA ID	novel_zma_miR15372
Species	Zea mays
Class	miRNA
Genome position	Chr9:8236281-8236429 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GAGGGAAGGGAGCGGAUCUGGUGU - 24
Stem-loop(if miRNA)	----      A     C   UCU      - -      G   U   UCUCAACACUC    C  CA    A   CUU   CAA     GAGGGA GGGAG GGA   GGUGUU C CGUGGU ACG AGU           UGGC AC  GGGC CGU   CUC   C     |||||| ||||| |||   |||||| | |||||| ||| |||           |||| ||  |||| |||   |||   C     CUCUCU CCCUC CUU   CCACGA G GCGCCG UGC UCA           ACCG UG  CCCG GUA   GAG   G CCUU      -     -   CUU      C C      A   -   -----------    C  UA    C   CCU   CUU
Stem-loop sequence	GAGGGAAGGGAGCGGAUCUGGUGUUCCGUGGUGACGUAGUUCUCAACACUCUGGCCACCAGGGCACGUCUUCUCCAACCGUUCGAGUCCAUGCGCCCAUGUCGCCAACUCGUAGCCGCGCGCAGCACCUUCUUCCUCCCUCUCUCUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945022.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   *||||||||||||||||||||||| targets:162   UCACCAGAUCCGCUCCCUUCCCUC   185 Target Full Sequence	0.0	Zea mays clone 238541 mRNA sequence	NA	coding protein	psRNATarget
XM_020550386.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   *||||||||||||||||||||||| targets:280   UCACCAGAUCCGCUCCCUUCCCUC   303 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103650862 (LOC103650862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065509.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   *||||||||||||||||||||||| targets:280   UCACCAGAUCCGCUCCCUUCCCUC   303 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0200N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU950655.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   *|||||||||=||||||||||||| targets:324   UCACCAGAUCUGCUCCCUUCCCUC   347 Target Full Sequence	1.0	Zea mays clone 506469 mRNA sequence	NA	coding protein	psRNATarget
XM_020539364.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   *|||||||||=||||||||||||| targets:318   UCACCAGAUCUGCUCCCUUCCCUC   341 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-directed DNA polymerase (reverse transcriptase) (LOC103629684), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539363.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   *|||||||||=||||||||||||| targets:318   UCACCAGAUCUGCUCCCUUCCCUC   341 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-directed DNA polymerase (reverse transcriptase) (LOC103629684), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU952095.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   *||||||||||||*|||||||||| targets:1537   UCACCAGAUCCGCACCCUUCCCUC   1560 Target Full Sequence	1.5	Zea mays clone 1164250 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681224.2	ncRNA:24   UGUGGUCUAG-GCGAGGGAAGGGAG   1   *||||||*||-|||||||||||||| targets:320   UCACCAGUUCACGCUCCCUUCCCUC   344 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103654380 (LOC103654380), mRNA	NA	coding protein	psRNATarget
XM_008676448.2	ncRNA:24   UGUG-GUCUAGGCGAGGGAAGGGAG   1   |||=-=|*=||=||||||||||||| targets:1964   ACAUGUAAGUCUGCUCCCUUCCCUC   1988 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103650853), mRNA	NA	coding protein	psRNATarget
NM_001143107.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   =|==|**=|||||||||||||||| targets:268   GCGUCCUGUCCGCUCCCUUCCCUC   291 Target Full Sequence	3.0	Zea mays uncharacterized LOC100216702 (LOC100216702), mRNA	NA	coding protein	psRNATarget
BT037202.1	ncRNA:24   UGUGGUCUAGGCGAGGGAAGGGAG   1   =|==|**=|||||||||||||||| targets:268   GCGUCCUGUCCGCUCCCUUCCCUC   291 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0158L17 mRNA, complete cds	NA	coding protein	psRNATarget