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BaseInfo

ncRNA ID	novel_zma_miR15370
Species	Zea mays
Class	miRNA
Genome position	Chr1:241028428-241028531 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	81 - AAUCCCCUUCUGGAUUGGUGGAAC - 104
Stem-loop(if miRNA)	--UA                        G     CAU   C          A     UACCAAUCCAGAAGGGGAUUGGAG GGAUU   UCC CUCCUAGUCA A     |||||||||||||||||||||||| |||||   ||| ||||||||||     GUGGUUAGGUCUUCCCCUAACCUC CCUAA   AGG GAGGAUCAGU A CAAG                        G     AUU   A          A
Stem-loop sequence	UAUACCAAUCCAGAAGGGGAUUGGAGGGGAUUCAUUCCCCUCCUAGUCAAAAAUGACUAGGAGAGGAUUAAAUCCGCUCCAAUCCCCUUCUGGAUUGGUGGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095217.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*||||||||||||=||||||| targets:47   GUUACACCAAUCCAGAGGGGGAUU   70 Target Full Sequence	1.5	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   CAAG-GUGGUUAGGUCUUCCCCUAA   1   |||=-||||||||||||=||||||| targets:9   GUUUACACCAAUCCAGAGGGGGAUU   33 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   CAAG-GUGGUUAGGUCUUCCCCUAA   1   |||=-||||||||||||=||||||| targets:9   GUUUACACCAAUCCAGAGGGGGAUU   33 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   CAAG-GUGGUUAGGUCUUCCCCUAA   1   |||=-||||||||||||=||||||| targets:9   GUUUACACCAAUCCAGAGGGGGAUU   33 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*||||||||||||=||||||| targets:1278   GUUACACCAAUCCAGAGGGGGAUU   1301 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*|||||||=|||||||||||* targets:23   GUUACACCAAUUCAGAAGGGGAUC   46 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*|||||||=|||||||||||* targets:23   GUUACACCAAUUCAGAAGGGGAUC   46 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*|||||||=|||||||||||* targets:23   GUUACACCAAUUCAGAAGGGGAUC   46 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*||=|||||||||||||*||| targets:455   GUUACAUCAAUCCAGAAGGGUAUU   478 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*||=|||||||||||||*||| targets:455   GUUACAUCAAUCCAGAAGGGUAUU   478 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
BT063242.2	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |||*=|||||||||||||*||||| targets:485   GUUAUACCAAUCCAGAAGAGGAUU   508 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0042E19 mRNA, complete cds	NA	coding protein	psRNATarget
EU953211.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |*|*||=*|||||||||||||||| targets:1731   GAUACAUGAAUCCAGAAGGGGAUU   1754 Target Full Sequence	2.0	Zea mays clone 1390646 mRNA sequence	NA	coding protein	psRNATarget
NM_001319738.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |*|*||=*|||||||||||||||| targets:1757   GAUACAUGAAUCCAGAAGGGGAUU   1780 Target Full Sequence	2.0	Zea mays cytochrome P450 81D11-like (LOC103640488), mRNA	NA	coding protein	psRNATarget
EU957986.1	ncRNA:24   CAAGGUGGUUAGGUCUUCCCCUAA   1   |*|*||=*|||||||||||||||| targets:1758   GAUACAUGAAUCCAGAAGGGGAUU   1781 Target Full Sequence	2.0	Zea mays clone 1639355 cytochrome P450 CYP81N5 mRNA, complete cds	NA	coding protein	psRNATarget