Search result

BaseInfo

ncRNA ID	novel_zma_miR15366
Species	Zea mays
Class	miRNA
Genome position	Chr9:1974804-1974867 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - UGGAGUGGAUUGAGGGGAUUGGAG - 24
Stem-loop(if miRNA)	--           G     -               UGGAGUGGAUU AGGGG AUUGGAGGGGAUU   ||||||||||| ||||| ||||||||||||A   ACCUCACCUAA UCCCC UAACCUCCCCUAA AA           G     C
Stem-loop sequence	UGGAGUGGAUUGAGGGGAUUGGAGGGGAUUAAAUCCCCUCCAAUCCCCCUGAAUCCACUCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961775.1	ncRNA:24   GAGGUUAGGGGAGUUAGGUGAGGU   1   ||=|*|||||||||||||||*||* targets:1106   CUUCCAUCCCCUCAAUCCACCCCU   1129 Target Full Sequence	2.5	Zea mays clone 238196 6b-interacting protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155558.1	ncRNA:24   GAGGUUAGGGGAGUUAGGUGAGGU   1   ||=|*|||||||||||||||*||* targets:1106   CUUCCAUCCCCUCAAUCCACCCCU   1129 Target Full Sequence	2.5	Zea mays 6b-interacting protein 1 (LOC100282650), mRNA	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   GAGGUUAGGGGA-GUUAGGUGAGGU   1   =***||||||||-|||||||||||| targets:3905   UCAAAAUCCCCUUCAAUCCACUCCA   3929 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055408.1	ncRNA:24   GAGG-UUAGGG-GAGUUAGGUGAGGU   1   *|||-||*|||-|||||||||||||| targets:804   AUCCUAAACCCACUCAAUCCACUCCA   829 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152975.1	ncRNA:24   GAGG-UUAGGG-GAGUUAGGUGAGGU   1   *|||-||*|||-|||||||||||||| targets:804   AUCCUAAACCCACUCAAUCCACUCCA   829 Target Full Sequence	3.0	Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA	NA	coding protein	psRNATarget
XM_008649521.2	ncRNA:24   GAGG-UUAGGG-GAGUUAGGUGAGGU   1   *|||-||*|||-|||||||||||||| targets:856   AUCCUAAACCCACUCAAUCCACUCCA   881 Target Full Sequence	3.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649520.2	ncRNA:24   GAGG-UUAGGG-GAGUUAGGUGAGGU   1   *|||-||*|||-|||||||||||||| targets:885   AUCCUAAACCCACUCAAUCCACUCCA   910 Target Full Sequence	3.0	PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167414.1	ncRNA:22   GGUUAGGG-GAGUUAGGUGAGGU   1   |=||*|||-|||||||||||||| targets:1   CUAAACCCACUCAAUCCACUCCA   23 Target Full Sequence	3.0	Sequence 5078 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239083.1	ncRNA:22   GGUUAGGG-GAGUUAGGUGAGGU   1   |=||*|||-|||||||||||||| targets:1   CUAAACCCACUCAAUCCACUCCA   23 Target Full Sequence	3.0	Sequence 5078 from Patent EP2985353	NA	coding protein	psRNATarget
HI406953.1	ncRNA:22   GGUUAGGG-GAGUUAGGUGAGGU   1   |=||*|||-|||||||||||||| targets:1   CUAAACCCACUCAAUCCACUCCA   23 Target Full Sequence	3.0	Sequence 5078 from Patent EP2074227	NA	coding protein	psRNATarget