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BaseInfo

ncRNA ID novel_zma_miR15361
Species Zea mays
Class miRNA
Genome position Chr9:15787543-15787604 [+]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 1 - AGGAUUGGAGAGGAUUGAGGGGGA - 24
Stem-loop(if miRNA) --          A                AA
  AGGAUUGGAG GGAUUGAGGGGGAAAU  A
  |||||||||| ||||||||||||||||
  UCCUAACCUC CCUAACUCCCCCUUUA  C
CC          C                AU
Stem-loop sequence AGGAUUGGAGAGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166853.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=||||||||||||||||=|||||
targets:50   UUCCCCUCAAUCCUCUCCGAUCCU   73

1.5 Sequence 4517 from Patent EP2559767 NA coding protein psRNATarget
LQ238522.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=||||||||||||||||=|||||
targets:50   UUCCCCUCAAUCCUCUCCGAUCCU   73

1.5 Sequence 4517 from Patent EP2985353 NA coding protein psRNATarget
HI406392.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=||||||||||||||||=|||||
targets:50   UUCCCCUCAAUCCUCUCCGAUCCU   73

1.5 Sequence 4517 from Patent EP2074227 NA coding protein psRNATarget
NM_001352049.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=||||||||||||||||=|||||
targets:549   UUCCCCUCAAUCCUCUCCGAUCCU   572

1.5 Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA NA coding protein psRNATarget
XM_020547779.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=||||||||||||||||=|||||
targets:577   UUCCCCUCAAUCCUCUCCGAUCCU   600

1.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547780.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=||||||||||||||||=|||||
targets:579   UUCCCCUCAAUCCUCUCCGAUCCU   602

1.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA NA coding protein psRNATarget
JB163954.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |||||||||||||*||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
HI403493.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |||||||||||||*||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |||||||||||||*||||||||||
targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=|=|||||||||*||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
HI403355.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=|=|||||||||*||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=|=|||||||||*||||||||||
targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53

1.5 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
XM_008672733.2
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |||*|||||||||||||||||||*
targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452

1.0 PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA NA coding protein psRNATarget
BT088155.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  ||=|=||||||||*||||||||||
targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486

1.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EU942844.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |||*||||||||||||=||||||*
targets:195   UCCACCUCAAUCCUCUUCAAUCCC   218

2.5 Zea mays clone 1540330 mRNA sequence NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |==||||=|||||*||||||||||
targets:77   UUUCCCUUAAUCCCCUCCAAUCCU   100

2.5 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
XM_008671926.2
ncRNA:24   AGGG-GGAGUUAGGAGAGGUUAGGA   1
  |||=-||||||||||||||||||=*
targets:1065   UCCUACCUCAAUCCUCUCCAAUCUC   1089

2.5 PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=|*|||||||||*||||||||||
targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98

1.5 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
XM_020539803.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  ||=*|||||||||||||||||=|*
targets:836   UCUACCUCAAUCCUCUCCAAUUCC   859

2.5 PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001347002.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  ||=*|||||||||||||||||=|*
targets:1146   UCUACCUCAAUCCUCUCCAAUUCC   1169

2.5 Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA NA coding protein psRNATarget
XM_008658575.2
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  ||=*|||||||||||||||||=|*
targets:1158   UCUACCUCAAUCCUCUCCAAUUCC   1181

2.5 PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA NA coding protein psRNATarget
AY110351.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  |=|*|||||||||*||||||||||
targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64

1.5 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
HI403290.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  ||=|*||||||||*|||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  ||=|*||||||||*|||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
JB163751.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  ||=|*||||||||*|||||||||*
targets:70   UCUCACUCAAUCCCCUCCAAUCCC   93

2.5 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
JB166594.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  *||*|||||||||*|||||||||*
targets:86   ACCACCUCAAUCCACUCCAAUCCG   109

2.5 Sequence 4258 from Patent EP2559767 NA coding protein psRNATarget
LQ238263.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  *||*|||||||||*|||||||||*
targets:86   ACCACCUCAAUCCACUCCAAUCCG   109

2.5 Sequence 4258 from Patent EP2985353 NA coding protein psRNATarget
HI406133.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  *||*|||||||||*|||||||||*
targets:86   ACCACCUCAAUCCACUCCAAUCCG   109

2.5 Sequence 4258 from Patent EP2074227 NA coding protein psRNATarget
HI406953.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  *|||*||||||||*|||||||||*
targets:5   ACCCACUCAAUCCACUCCAAUCCA   28

2.5 Sequence 5078 from Patent EP2074227 NA coding protein psRNATarget
LQ239083.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  *|||*||||||||*|||||||||*
targets:5   ACCCACUCAAUCCACUCCAAUCCA   28

2.5 Sequence 5078 from Patent EP2985353 NA coding protein psRNATarget
JB167414.1
ncRNA:24   AGGGGGAGUUAGGAGAGGUUAGGA   1
  *|||*||||||||*|||||||||*
targets:5   ACCCACUCAAUCCACUCCAAUCCA   28

2.5 Sequence 5078 from Patent EP2559767 NA coding protein psRNATarget
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