Search result

BaseInfo

ncRNA ID novel_zma_miR15359
Species Zea mays
Class miRNA
Genome position Chr9:141978548-141978638 [+]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 68 - CGGUUCGGCCUGGGUGGGACGGUU - 91
Stem-loop(if miRNA) CU -  G  -  GGUUCGAAAAUUGUAGCAUUCUGUCGGGAGCGUG
  G CU GU CU                                  C
  | || || ||
  G CA GG UG                                  G
UU G  -  G  GGUCCGGCUUGGCUGCGAAGCAGAAGCAGGGAAA
Stem-loop sequence CUGCUGGUCUGGUUCGAAAAUUGUAGCAUUCUGUCGGGAGCGUGCGAAAGGGACGAAGACGAAGCGUCGGUUCGGCCUGGGUGGGACGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547520.1
ncRNA:24   UUGGCAGGGUGGGUCCGGCUUGGC   1
  |||||*||||||||||||||||||
targets:2903   AACCGCCCCACCCAGGCCGAACCG   2926

1.0 PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547519.1
ncRNA:24   UUGGCAGGGUGGGUCCGGCUUGGC   1
  |||||*||||||||||||||||||
targets:2903   AACCGCCCCACCCAGGCCGAACCG   2926

1.0 PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547518.1
ncRNA:24   UUGGCAGGGUGGGUCCGGCUUGGC   1
  |||||*||||||||||||||||||
targets:2903   AACCGCCCCACCCAGGCCGAACCG   2926

1.0 PREDICTED: Zea mays putative galacturonosyltransferase 10 (LOC100272968), transcript variant X1, mRNA NA coding protein psRNATarget