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BaseInfo

ncRNA ID	novel_zma_miR15355
Species	Zea mays
Class	miRNA
Genome position	Chr2:198258754-198258841 [-]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	1 - AUCAAUCUCCUUCAAUCCAUAUGG - 24
Stem-loop(if miRNA)	--                     -------------------- GGGGUUUCAA   AUAUGGAUUGAAGGGGAUUGA                    G          U   |||||||||||||||||||||                    |   UAUACCUAACUUCCUCUAACU                    C          C GG                     AUGCCUAACCUCCCCUAAUA UGAAUGACCC
Stem-loop sequence	AUAUGGAUUGAAGGGGAUUGAGGGGGUUUCAAUCCCCAGUAAGUCAUAAUCCCCUCCAAUCCGUAUCAAUCUCCUUCAAUCCAUAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680349.2	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   ||||||||||||||||=||||||| targets:1902   CCAUAUGGAUUGAAGGGGAUUGAU   1925 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   |||||||||||||=|||||||||* targets:31   CCAUAUGGAUUGAGGGAGAUUGAG   54 Target Full Sequence	2.5	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
HI406643.1	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   |||||||||||||=|||||||||* targets:31   CCAUAUGGAUUGAGGGAGAUUGAG   54 Target Full Sequence	2.5	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget
JB167104.1	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   |||||||||||||=|||||||||* targets:31   CCAUAUGGAUUGAGGGAGAUUGAG   54 Target Full Sequence	2.5	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008648001.2	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   ||||||||||||||||=||||||* targets:3974   CCAUAUGGAUUGAAGGGGAUUGAG   3997 Target Full Sequence	2.5	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648000.2	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   ||||||||||||||||=||||||* targets:4068   CCAUAUGGAUUGAAGGGGAUUGAG   4091 Target Full Sequence	2.5	PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU948993.1	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   ||||||*|||||||||=||||||| targets:528   CCAUAUAGAUUGAAGGGGAUUGAU   551 Target Full Sequence	2.5	Zea mays clone 393064 mRNA sequence	NA	coding protein	psRNATarget
EU969259.1	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   ||||=|||||*||||||||||||* targets:1159   CCAUGUGGAUCGAAGGAGAUUGAG   1182 Target Full Sequence	2.0	Zea mays clone 327659 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157563.1	ncRNA:24   GGUAUACCUAACUUCCUCUAACUA   1   ||||=|||||*||||||||||||* targets:1159   CCAUGUGGAUCGAAGGAGAUUGAG   1182 Target Full Sequence	2.0	Zea mays F-box domain containing protein (LOC100284668), mRNA	NA	coding protein	psRNATarget