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BaseInfo

ncRNA ID	novel_zma_miR15353
Species	Zea mays
Class	miRNA
Genome position	Chr8:124195297-124195378 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	21
Mature sequence(if miRNA)	62 - AGAAGGGGAUUGGAGGAGAUU - 82
Stem-loop(if miRNA)	--                A                     A   AGAAGGGGAUUGGAGG GAUUAAAUCCCCUCCUAGUCA A   |||||||||||||||| |||||||||||||||||||||   UCUUUCCCUAACCUCC CUAAUUUAGGGGAGGAUCAGU A GG                C                     A
Stem-loop sequence	AGAAGGGGAUUGGAGGAGAUUAAAUCCCCUCCUAGUCAAAAAUGACUAGGAGGGGAUUUAAUCCCCUCCAAUCCCUUUCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001157439.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||=|||||||||| targets:527   AAUCUCCUCCGAUCCCCUUCU   547 Target Full Sequence	1.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||=|||||||||| targets:527   AAUCUCCUCCGAUCCCCUUCU   547 Target Full Sequence	1.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	1.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	1.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	1.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	1.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	1.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||||||||||||||||* targets:89   AAUCUCCUCCAAUCCCCUUCG   109 Target Full Sequence	1.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008683200.2	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   |||||=||||||||||=|||| targets:414   AAUCUUCUCCAAUCCCUUUCU   434 Target Full Sequence	2.5	PREDICTED: Zea mays putative O-glycosyl hydrolase family 17 protein (LOC100273173), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU942501.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   *||||=|||||||=||||||| targets:276   UAUCUUCUCCAAUUCCCUUCU   296 Target Full Sequence	2.5	Zea mays clone 1511507 mRNA sequence	NA	coding protein	psRNATarget
S78780.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||=*||||||||||||* targets:433   AAUCUCUCCCAAUCCCCUUCG   453 Target Full Sequence	3.0	(gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt]	NA	coding protein	psRNATarget
AY109329.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||||=*||||||||||||* targets:433   AAUCUCUCCCAAUCCCCUUCG   453 Target Full Sequence	3.0	Zea mays CL1979_1 mRNA sequence	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:19   AGAGGAGGUUAGGGGAAGA   1   ||*|||=|||||||||||| targets:1   UCCCCUUCAAUCCCCUUCU   19 Target Full Sequence	2.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
BT085111.1	ncRNA:21   UUAGAGGAGGUUAGGGGAAGA   1   ||||*|*|||||||||||||* targets:1403   AAUCACAUCCAAUCCCCUUCG   1423 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget