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BaseInfo

ncRNA ID	novel_zma_miR15352
Species	Zea mays
Class	miRNA
Genome position	Chr8:135041327-135041386 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	37 - GAGAUUGGAGGGGAUUGAGGUGGA - 60
Stem-loop(if miRNA)	--GA         G A      U      GA     GAUUGGAGG G UUGAGG GGAAAU  A     ||||||||| | |||||| ||||||     CUAACUUCU U AACUCU CCUUUA  C AGUC         G -      -      AU
Stem-loop sequence	GAGAUUGGAGGGGAUUGAGGUGGAAAUGAACUAAUUUCCUCUCAAUGUCUUCAAUCCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ055746.1	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAG-AG   1   |=||||||||||||||||||||-|| targets:75   UUCACCUCAAUCCCCUCCAAUCCUC   99 Target Full Sequence	3.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAG-AG   1   |=||||||||||||||||||||-|| targets:41   UUCACCUCAAUCCCCUCCAAUCCUC   65 Target Full Sequence	3.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008671926.2	ncRNA:24   AGG-UGGAGUUAGGGGAGGUUAGAG   1   |||-||||||||||=|||||||||| targets:1065   UCCUACCUCAAUCCUCUCCAAUCUC   1089 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAG-AG   1   |||*||||||||||||||||||-|| targets:32   UCCCCCUCAAUCCCCUCCAAUCCUC   56 Target Full Sequence	3.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAG-AG   1   |||*||||||||||||||||||-|| targets:32   UCCCCCUCAAUCCCCUCCAAUCCUC   56 Target Full Sequence	3.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAG-AG   1   |||*||||||||||||||||||-|| targets:32   UCCCCCUCAAUCCCCUCCAAUCCUC   56 Target Full Sequence	3.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAG-AG   1   ||=*=|||||||||||||||||-|| targets:1463   UCUCUCUCAAUCCCCUCCAAUCCUC   1487 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662174.2	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAGAG   1   |=|=*|||||||||||||||*||| targets:678   UUCGGCUCAAUCCCCUCCAAGCUC   701 Target Full Sequence	1.5	PREDICTED: Zea mays leucine-rich repeat receptor protein kinase EMS1 (LOC103639431), mRNA	NA	coding protein	psRNATarget
XM_008649772.2	ncRNA:24   AGGUGGAGUUAGGGGAGGUUAGAG   1   |=|=*|||||||||||||||*||| targets:966   UUCGGCUCAAUCCCCUCCAAGCUC   989 Target Full Sequence	1.5	PREDICTED: Zea mays Putative leucine-rich repeat protein kinase family protein (LOC100304214), transcript variant X1, mRNA	NA	coding protein	psRNATarget