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BaseInfo

ncRNA ID	novel_zma_miR15349
Species	Zea mays
Class	miRNA
Genome position	Chr8:177202453-177202502 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - ACCGGACUGUUCGGUGCGUCCAUC - 24
Stem-loop(if miRNA)	--   -           U       G   UGG CGCACCGGACA GUCCGGU U   ||| ||||||||||| |||||||   ACC GCGUGGCUUGU CAGGCCA G CU   U           -       C
Stem-loop sequence	UGGCGCACCGGACAUGUCCGGUGUGCACCGGACUGUUCGGUGCGUCCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ108756.1	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   |||||=|||||||=|||||||||| targets:144   GAUGGGCGCACCGGACAGUCCGGU   167 Target Full Sequence	2.5	TSA: Zea mays contig44415, mRNA sequence	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CUA-CCUGCGUGGCUUGUCAGGCCA   1   *||-||=|||||||=|||||||||| targets:482   CAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CUAC-CUGCGUGGCUUGUCAGGCCA   1   |||*-|=|||||||=|||||||||| targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CUA-CCUGCGUGGCUUGUCAGGCCA   1   *||-||=|||||||=|||||||||| targets:482   CAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CUAC-CUGCGUGGCUUGUCAGGCCA   1   |||*-|=|||||||=|||||||||| targets:578   GAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CUA-CCUGCGUGGCUUGUCAGGCCA   1   *||-||=|||||||=|||||||||| targets:4376   CAUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   *|*||=|||||||=|||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   *|*||=|||||||=|||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   |**||=|||||||=|||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   |**||=|||||||=|||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   *=|*|=|||||||=|||||||||| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   *=|*|=|||||||=|||||||||| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CUAC--CUGCGUGGCUUGUCAGGCCA   1   |*||--|||*|||||||||||||||| targets:744   GCUGAAGACUCACCGAACAGUCCGGU   769 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:24   CUACCUGCGUGGCUUGUCAGGCCA   1   |=||-||*|||||=|||||||||| targets:25   GGUG-ACUCACCGGACAGUCCGGU   47 Target Full Sequence	2.5	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget