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BaseInfo

ncRNA ID	novel_zma_miR15348
Species	Zea mays
Class	miRNA
Genome position	Chr2:215494729-215494830 [-]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	79 - ACUAUCUAUCUAGUUUGACUAGUU - 102
Stem-loop(if miRNA)	--    U           G    -    GAG     AG       U    AAU   ACUA CUAUCUAGUUU ACUA GUUA   UGGCU  CCAAAUU GGCU   G   |||| ||||||||||| |||| ||||   |||||  ||||||| ||||   UGAU GGUAGAUUAAG UGGU CAAU   GCUGA  GGUUUAA CCGA   A UC    C           -    U    -AA     GA       -    GGG
Stem-loop sequence	ACUAUCUAUCUAGUUUGACUAGUUAGAGUGGCUAGCCAAAUUUGGCUAAUGAGGGAGCCAAUUUGGAGAGUCGAAUAACUUGGUGAAUUAGAUGGCUAGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651672.2	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =|||||*||||||||||||||||| targets:2128   GACUAGCCAAACUAGAUAGAUAGU   2151 Target Full Sequence	1.0	PREDICTED: Zea mays heat stress transcription factor A-4d (LOC103630625), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651671.2	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =|||||*||||||||||||||||| targets:2094   GACUAGCCAAACUAGAUAGAUAGU   2117 Target Full Sequence	1.0	PREDICTED: Zea mays heat stress transcription factor A-4d (LOC103630625), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543846.1	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =|||||*=|||||||||||||||| targets:425   GACUAGCUAAACUAGAUAGAUAGU   448 Target Full Sequence	2.0	PREDICTED: Zea mays dwarf plant 3 (d3), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660803.2	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =|||||*=|||||||||||||||| targets:424   GACUAGCUAAACUAGAUAGAUAGU   447 Target Full Sequence	2.0	PREDICTED: Zea mays dwarf plant 3 (d3), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679490.2	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =||*||*||||||||||||||||| targets:2980   GACGAGCCAAACUAGAUAGAUAGU   3003 Target Full Sequence	1.0	PREDICTED: Zea mays CCT motif family protein (LOC100283743), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679493.2	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =||*||*||||||||||||||||| targets:2134   GACGAGCCAAACUAGAUAGAUAGU   2157 Target Full Sequence	1.0	PREDICTED: Zea mays CCT motif family protein (LOC100283743), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552249.1	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =||*||*||||||||||||||||| targets:1718   GACGAGCCAAACUAGAUAGAUAGU   1741 Target Full Sequence	1.0	PREDICTED: Zea mays CCT motif family protein (LOC100283743), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU965769.1	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =||*||*||||||||||||||||| targets:1670   GACGAGCCAAACUAGAUAGAUAGU   1693 Target Full Sequence	1.0	Zea mays clone 288773 CCT motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156642.1	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =||*||*||||||||||||||||| targets:1670   GACGAGCCAAACUAGAUAGAUAGU   1693 Target Full Sequence	1.0	Zea mays CCT motif family protein (LOC100283743), mRNA	NA	coding protein	psRNATarget
BT041934.2	ncRNA:24   UUGAUCAGUUUGAUCUAUCUAUCA   1   =||*||*||||||||||||||||| targets:1606   GACGAGCCAAACUAGAUAGAUAGU   1629 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0082L23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001346577.1	ncRNA:24   UU-GAUCAGUUUGAUCUAUCUAUCA   1   ||-||*|*=|=|||||||||||||| targets:3722   AAUCUUGAUAGACUAGAUAGAUAGU   3746 Target Full Sequence	3.0	Zea mays death-inducer obliterator 1-like (LOC103627127), mRNA	NA	coding protein	psRNATarget