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BaseInfo

ncRNA ID novel_zma_miR15346
Species Zea mays
Class miRNA
Genome position Chr8:164285334-164285419 [+]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 63 - GGUUCCAGUGACUAAAUCGGACUA - 86
Stem-loop(if miRNA) --    -           -A        -------           A
  GUUC AUUUAGUCACU  GACUAAAU       UUUAGUGACUA A
  |||| |||||||||||  ||||||||       ||||||||||| G
  CAGG UAAAUCAGUGA  UUGGUUUG       AAAUCGCUGAU U
AU    C           CC        UUCCAUG           U
Stem-loop sequence GUUCAUUUAGUCACUAGACUAAAUUUUAGUGACUAAAGUUUAGUCGCUAAAGUACCUUGUUUGGUUCCAGUGACUAAAUCGGACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU946806.1
ncRNA:24   AUCAGGCUAAAUCAGUGACCUUGG   1
  |||||||=||||||||||||||||
targets:428   UAGUCCGGUUUAGUCACUGGAACC   451

1.0 Zea mays clone 323778 mRNA sequence NA coding protein psRNATarget
XM_008658979.2
ncRNA:24   AUCAGGCUAAAUCAGUGACCUUGG   1
  |||||||=||||||||||||||||
targets:898   UAGUCCGGUUUAGUCACUGGAACC   921

1.0 PREDICTED: Zea mays uncharacterized LOC103636623 (LOC103636623), mRNA NA coding protein psRNATarget
XM_008665258.2
ncRNA:24   AUCAGGCUAAAUCAGUGACCUUGG   1
  |||||||=||||||||||||||||
targets:41   UAGUCCGGUUUAGUCACUGGAACC   64

1.0 PREDICTED: Zea mays Sugar isomerase (SIS) family protein (LOC103641959), mRNA NA coding protein psRNATarget
XM_008653737.2
ncRNA:24   AUCAGGCUAAAUCAGUGACCUUGG   1
  |||||||||||||||||||||||*
targets:2218   UAGUCCGAUUUAGUCACUGGAACA   2241

1.0 PREDICTED: Zea mays uncharacterized LOC103631898 (LOC103631898), mRNA NA coding protein psRNATarget