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BaseInfo

ncRNA ID	novel_zma_miR15339
Species	Zea mays
Class	miRNA
Genome position	Chr2:230567106-230567224 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	1 - GGUGUGCUCAGUUUUACCCUCAGU - 24
Stem-loop(if miRNA)	--                    C     C                         -  U U   GGUGUGCUCAGUUUUACCCU AGUGG GUUUUUUGCUCAGUUUUGCCCUUCU GU C A   |||||||||||||||||||| ||||| ||||||||||||||||||||||||| || |   CCACACGAGUCAAAAUGGGA UCACC CAAAAAACGAGUCAAAACGGGAAGG CA G U CA                    A     A                         U  C A
Stem-loop sequence	GGUGUGCUCAGUUUUACCCUCAGUGGCGUUUUUUGCUCAGUUUUGCCCUUCUGUUCUAUAGCACUGGAAGGGCAAAACUGAGCAAAAAACACCACUAAGGGUAAAACUGAGCACACCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061928.1	ncRNA:24   UGACUCCCAUUUUGACUCGUGUGG   1   |||*|||||||||*|||||||||| targets:556   ACUAAGGGUAAAAAUGAGCACACC   579 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0198J17 mRNA, complete cds	NA	coding protein	psRNATarget
BT055615.2	ncRNA:24   UGACUCCCAUUUUGACUCGUGUGG   1   |||*|*|||||||||||||||||* targets:111   ACUAAAGGUAAAACUGAGCACACA   134 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0072O22 mRNA, complete cds	NA	coding protein	psRNATarget
EU941051.1	ncRNA:24   UGAC---UCCCA-UUUUGACUCGUGUGG   1   |*||---|*|||-||||||||||||||| targets:23   AAUGGUCAAGGUCAAAACUGAGCACACC   50 Target Full Sequence	3.0	Zea mays clone 1281514 mRNA sequence	NA	coding protein	psRNATarget
XM_008681439.2	ncRNA:24   UGAC---UCCCA-UUUUGACUCGUGUGG   1   |*||---|*|||-||||||||||||||| targets:2138   AAUGGUCAAGGUCAAAACUGAGCACACC   2165 Target Full Sequence	3.0	PREDICTED: Zea mays DUF724 domain-containing protein 2 (LOC103654600), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681438.2	ncRNA:24   UGAC---UCCCA-UUUUGACUCGUGUGG   1   |*||---|*|||-||||||||||||||| targets:2729   AAUGGUCAAGGUCAAAACUGAGCACACC   2756 Target Full Sequence	3.0	PREDICTED: Zea mays DUF724 domain-containing protein 2 (LOC103654600), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681437.2	ncRNA:24   UGAC---UCCCA-UUUUGACUCGUGUGG   1   |*||---|*|||-||||||||||||||| targets:2754   AAUGGUCAAGGUCAAAACUGAGCACACC   2781 Target Full Sequence	3.0	PREDICTED: Zea mays DUF724 domain-containing protein 2 (LOC103654600), transcript variant X1, mRNA	NA	coding protein	psRNATarget