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BaseInfo

ncRNA ID novel_zma_miR15336
Species Zea mays
Class miRNA
Genome position Chr7:101491976-101492076 [-]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 78 - UGGCGAAAGAUUGGGUUGGGGCAA - 101
Stem-loop(if miRNA) --       --A     GG       -  AG    --    U  C    G AGG
  UGGCGAA   GAUUG  UUGGGGC AA  GUCG  GUGC GC GGUG C   C
  |||||||   |||||  ||||||| ||  ||||  |||| || |||| |   U
  ACUGUUU   CUGGU  GGCUUCG UU  CAGC  CACG CG UCAC G   A
CG       GUG     --       G  GA    GG    -  C    G GGU
Stem-loop sequence UGGCGAAAGAUUGGGUUGGGGCAAAGGUCGGUGCUGCCGGUGGCAGGCUAUGGGGCACUCGCGCACGGCGACAGUUGGCUUCGGUGGUCGUGUUUGUCAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001111734.1
ncRNA:24   AACGGGGUUGGGUUAGAAAGCGGU   1
  ***||||||||||||||||*||||
targets:991   CACCCCCAACCCAAUCUUUAGCCA   1014

1.5 Zea mays legumin-like protein (LOC542101), mRNA NA coding protein psRNATarget
AY183450.1
ncRNA:24   AACGGGGUUGGGUUAGAAAGCGGU   1
  ***||||||||||||||||*||||
targets:991   CACCCCCAACCCAAUCUUUAGCCA   1014

1.5 Zea mays legumin-like protein mRNA, complete cds NA coding protein psRNATarget
EU962998.1
ncRNA:24   AACGGGGUUGGGUUAGAAAGCGGU   1
  ***||||||||||||||||*||||
targets:1014   CACCCCCAACCCAAUCUUUAGCCA   1037

1.5 Zea mays clone 247172 legumin-like protein mRNA, complete cds NA coding protein psRNATarget