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BaseInfo

ncRNA ID novel_zma_miR15331
Species Zea mays
Class miRNA
Genome position Chr6:116232883-116232989 [+]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 84 - UGAGUUCUCUGUCGAUGGGCACAC - 107
Stem-loop(if miRNA) --     G GA -         UG ---AUUA  U     GUGG         G  U
  GUGUU A  G UAGAGAGCU  G       CU GAAUG    UGGUUGGGG UA U
  ||||| |  | |||||||||  |       || |||||    ||||||||| ||
  CACGG U  C GUCUCUUGA  C       GA CUUAC    ACCAACCCC AU U
CA     G AG U         GU GAUCGCC  U     ---A         G  A
Stem-loop sequence GUGUUGAGAGUAGAGAGCUUGGAUUACUUGAAUGGUGGUGGUUGGGGGUAUUUAUAGCCCCAACCAACAUUCUAGCCGCUAGCUGAGUUCUCUGUCGAUGGGCACAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064593.1
ncRNA:24   CACACGGGUAGCUGUCUCUUGAGU   1
  |||||=||||||||||||||*|||
targets:897   GUGUGUCCAUCGACAGAGAAGUCA   920

2.5 Zea mays full-length cDNA clone ZM_BFc0188B15 mRNA, complete cds NA coding protein psRNATarget
BT063396.1
ncRNA:24   CACACGGGUAGCUGUCUCUUGAGU   1
  |||||=||||||||||||||*|||
targets:2856   GUGUGUCCAUCGACAGAGAAGUCA   2879

2.5 Zea mays full-length cDNA clone ZM_BFc0059P01 mRNA, complete cds NA coding protein psRNATarget