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BaseInfo

ncRNA ID	novel_zma_miR15329
Species	Zea mays
Class	miRNA
Genome position	Chr6:97586015-97586102 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - CUCGCGAGCCAGAACGAGCCGACU - 24
Stem-loop(if miRNA)	--          -A       C   -   -GG  -  -     CUG   CUCGCGAGCC  GAACGAG CGA CUC   CU CG GCUCG   C   ||||||||||  ||||||| ||| |||   || || |||||   A   GAGCGCUCGG  CUUGCUC GCU GGG   GA GC CGAGC   A CC          AG       A   C   GAA  A  U     AAA
Stem-loop sequence	CUCGCGAGCCAGAACGAGCCGACUCGGCUCGGCUCGCUGCAAAAACGAGCUCGAAGAAGGGGCUCGACUCGUUCGAGGCUCGCGAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544907.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   ||||||*||||||||||||||||| targets:2912   AGUCGGAUCGUUCUGGCUCGCGAG   2935 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100216781 (LOC100216781), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU953562.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   ***|||||=||||*|||||||||| targets:1416   CCGCGGCUUGUUCAGGCUCGCGAG   1439 Target Full Sequence	2.5	Zea mays clone 1434783 legumin-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156594.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   ***|||||=||||*|||||||||| targets:1415   CCGCGGCUUGUUCAGGCUCGCGAG   1438 Target Full Sequence	2.5	Zea mays legumin-like protein (LOC100283693), mRNA	NA	coding protein	psRNATarget
EU965566.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   ***|||||=||||*|||||||||| targets:1415   CCGCGGCUUGUUCAGGCUCGCGAG   1438 Target Full Sequence	2.5	Zea mays clone 287008 legumin-like protein mRNA, complete cds	NA	coding protein	psRNATarget
BT063603.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   ||*|*|||||**|||||||||||| targets:1507   AGCCAGCUCGAGCUGGCUCGCGAG   1530 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0084K15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174850.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   ||*|*|||||**|||||||||||| targets:1589   AGCCAGCUCGAGCUGGCUCGCGAG   1612 Target Full Sequence	2.5	Zea mays xylulose kinase-1 (LOC100382087), mRNA	NA	coding protein	psRNATarget
BT063106.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   ||*|*|||||**|||||||||||| targets:1589   AGCCAGCUCGAGCUGGCUCGCGAG   1612 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0026H14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UCAGCCGAGCAAGACCGAGCGCUC   1   **|=**=|=||||||||||||||| targets:2856   UUUUUUUUUGUUCUGGCUCGCGAG   2879 Target Full Sequence	3.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget