Search result

BaseInfo

ncRNA ID	novel_zma_miR15314
Species	Zea mays
Class	miRNA
Genome position	Chr6:137509350-137509415 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AUUGGAUGGUAUUGAGUCGGUUUA - 24
Stem-loop(if miRNA)	--      -   U      -UC     AA    A   AUUGGA UGG AUUGAG   GGUUU  AUUU U   |||||| ||| ||||||   |||||  |||| A   UAACUU ACC UAACUC   CUAAA  UGAA G CA      U   -      UAU     AC    C
Stem-loop sequence	AUUGGAUGGUAUUGAGUCGGUUUAAAUUUAUAGCAAGUCAAAAUCUAUCUCAAUCCAUUUCAAUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551219.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   |||||||||||||||||||||||| targets:283   UAAACCGACUCAAUACCAUCCAAU   306 Target Full Sequence	0.0	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
NM_001152495.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   |||||||||||||||||||=|||| targets:1123   UAAACCGACUCAAUACCAUUCAAU   1146 Target Full Sequence	1.5	Zea mays OTU-like cysteine protease family protein (LOC100279494), mRNA	NA	coding protein	psRNATarget
BT054344.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   |||||||||||||||||||=|||| targets:1123   UAAACCGACUCAAUACCAUUCAAU   1146 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0357J03 mRNA, complete cds	NA	coding protein	psRNATarget
BT041309.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   |||||||||||||||=|||||||| targets:99   UAAACCGACUCAAUAUCAUCCAAU   122 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350737.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   |||||=||||||||||||||=||| targets:4045   UAAACUGACUCAAUACCAUCUAAU   4068 Target Full Sequence	2.5	Zea mays phospholipase D family protein (LOC100272416), mRNA	NA	coding protein	psRNATarget
XM_020552941.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   ||||=|||||||||||||||||=| targets:2236   UAAAUCGACUCAAUACCAUCCAGU   2259 Target Full Sequence	1.5	PREDICTED: Zea mays anthocyanidin 5,3-O-glucosyltransferase-like (LOC109946117), mRNA	NA	coding protein	psRNATarget
AY104840.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   ||||=||||||||||||||=|||| targets:1317   UAAAUCGACUCAAUACCAUUCAAU   1340 Target Full Sequence	1.5	Zea mays PCO100726 mRNA sequence	NA	coding protein	psRNATarget
EU970241.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   ||||||||||||||||||*||||| targets:1115   UAAACCGACUCAAUACCAGCCAAU   1138 Target Full Sequence	1.5	Zea mays clone 342550 mRNA sequence	NA	coding protein	psRNATarget
XM_008654744.2	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   ||||||||||=|||||||*||||| targets:2150   UAAACCGACUUAAUACCACCCAAU   2173 Target Full Sequence	2.5	PREDICTED: Zea mays GTPase-activating protein gyp7 (LOC103633061), mRNA	NA	coding protein	psRNATarget
LQ239247.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   ||||=|||||||||||||*||||| targets:70   UAAAUCGACUCAAUACCACCCAAU   93 Target Full Sequence	1.5	Sequence 5242 from Patent EP2985353	NA	coding protein	psRNATarget
HI407117.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   ||||=|||||||||||||*||||| targets:70   UAAAUCGACUCAAUACCACCCAAU   93 Target Full Sequence	1.5	Sequence 5242 from Patent EP2074227	NA	coding protein	psRNATarget
JB167578.1	ncRNA:24   AUUUGGCUGAGUUAUGGUAGGUUA   1   ||||=|||||||||||||*||||| targets:70   UAAAUCGACUCAAUACCACCCAAU   93 Target Full Sequence	1.5	Sequence 5242 from Patent EP2559767	NA	coding protein	psRNATarget