Search result

BaseInfo

ncRNA ID	novel_zma_miR15300
Species	Zea mays
Class	miRNA
Genome position	Chr1:5940820-5940871 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	29 - GACUAGGAGAGGAUUAAAUCCCCU - 52
Stem-loop(if miRNA)	--A     C     C          A    GGAUU AAUCC CUUUUAGUCA A    ||||| ||||| ||||||||||    CCUAA UUAGG GAGGAUCAGU A UCC     A     A          A
Stem-loop sequence	AGGAUUCAAUCCCCUUUUAGUCAAAAAUGACUAGGAGAGGAUUAAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018562.1	ncRNA:24   UCCC-----------CUAAAUUAGGAGAGGAUCAG   1   ||||-----------|||||||||||||||||*|| targets:532   AGGGAGAUUGGAGAUGAUUUAAUCCUCUCCUAUUC   566 Target Full Sequence	1.5	Zea mays clone EL01N0441D07.d mRNA sequence	NA	coding protein	psRNATarget
XM_020537487.1	ncRNA:24   UCCC-----------CUAAAUUAGGAGAGGAUCAG   1   ||||-----------|||||||||||||||||*|| targets:1930   AGGGAGAUUGGAGAUGAUUUAAUCCUCUCCUAUUC   1964 Target Full Sequence	1.5	PREDICTED: Zea mays putative mitochondrial intermediate peptidase mitochondrial (LOC100384686), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537486.1	ncRNA:24   UCCC-----------CUAAAUUAGGAGAGGAUCAG   1   ||||-----------|||||||||||||||||*|| targets:2374   AGGGAGAUUGGAGAUGAUUUAAUCCUCUCCUAUUC   2408 Target Full Sequence	1.5	PREDICTED: Zea mays putative mitochondrial intermediate peptidase mitochondrial (LOC100384686), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001177163.1	ncRNA:24   UCCC-----------CUAAAUUAGGAGAGGAUCAG   1   ||||-----------|||||||||||||||||*|| targets:2537   AGGGAGAUUGGAGAUGAUUUAAUCCUCUCCUAUUC   2571 Target Full Sequence	1.5	Zea mays putative mitochondrial intermediate peptidase mitochondrial (LOC100384686), mRNA	NA	coding protein	psRNATarget
BT083941.1	ncRNA:24   UCCC-----------CUAAAUUAGGAGAGGAUCAG   1   ||||-----------|||||||||||||||||*|| targets:2537   AGGGAGAUUGGAGAUGAUUUAAUCCUCUCCUAUUC   2571 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0056N21 mRNA, complete cds	NA	coding protein	psRNATarget