Search result

BaseInfo

ncRNA ID	osa-miRf11127-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - CCGGUUGGUAACACCAACCGG - NA
Stem-loop(if miRNA)	--CUCCC  UU  A   CU UCAGACCUUGUCAAGCCCCCUGGGAUCUU UCUUUAGUCCCGGUUGGUAACACCAACCGGGA       GG  CU GAC  G                             U ||||||||||||||||||||||||||||||||       ||  || |||  |                             A AGAGAUCAGGGCCAACUAUUGUGGUUGGCCCU       AU  CC UAG  A                             C                                 CAUUUCA  --  -   -- AAUCAGAGCGAACCAUUGUGGUUGGCCCU
Stem-loop sequence	UCUUUAGUCCCGGUUGGUAACACCAACCGGGACUCCCGGUUCUAGACCUGUCAGACCUUGUCAAGCCCCCUGGGAUCUUUACUCCCGGUUGGUGUUACCAAGCGAGACUAAAGAUCCUAACUUUACUCCCGGUUGGUGUUAUCAACCGGGACUAGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||||||||||||||||| targets:158   CCGGUUGGUGUUACCAACCGG   178 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   |||||||||*||||||||||| targets:115   CCGGUUGGUUUUACCAACCGG   135 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||||||||||||||||| targets:1841   CCGGUUGGUGUUACCAACCGG   1861 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:21   GGCCAACCACAAUGGUUGG-CC   1   |||||||||||||||||||-|| targets:1387   CCGGUUGGUGUUACCAACCUGG   1408 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
HI404518.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||||||*|||||||||| targets:54   CCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||||||*|||||||||| targets:54   CCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
JB164979.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||||||*|||||||||| targets:54   CCGGUUGGUGCUACCAACCGG   74 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015758314.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||*|||||||||||||| targets:917   CCGGUUUGUGUUACCAACCGG   937 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA	uncharacterized LOC107278346(LOC107278346)	coding protein	psRNATarget
XM_015755226.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   |||||||*||||||||||||| targets:81   CCGGUUGAUGUUACCAACCGG   101 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288424.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||*|||||||||||||| targets:2392   CCGGUUAGUGUUACCAACCGG   2412 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||*|||||||||||||||||| targets:2399   CCCGUUGGUGUUACCAACCGG   2419 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   ||||||*||||||=||||||| targets:1176   CCGGUUUGUGUUAUCAACCGG   1196 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
JB164747.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   =||*||||||||||||||=|| targets:5   UCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   =||*||||||||||||||=|| targets:5   UCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
HI404286.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   =||*||||||||||||||=|| targets:5   UCGAUUGGUGUUACCAACUGG   25 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
AK119916.1	ncRNA:21   GGCCAACCACAAUGGUUGGCC   1   =||||||*||||||=|||||| targets:375   UCGGUUGAUGUUACUAACCGG   395 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F10, full insert sequence	NA	coding protein	psRNATarget