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BaseInfo

ncRNA ID	novel_zma_miR15296
Species	Zea mays
Class	miRNA
Genome position	Chr5:172222816-172222865 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	27 - UAAAUUUAGAGGACGUUGUUGGAU - 50
Stem-loop(if miRNA)	--                  --C  U   CCAGCAGCGUCCUCUAAA   GG U   ||||||||||||||||||   ||   GGUUGUUGCAGGAGAUUU   UC C UA                  AAA  U
Stem-loop sequence	CCAGCAGCGUCCUCUAAACGGUUCUCUAAAUUUAGAGGACGUUGUUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT085234.2	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   |||||==|=||||||||||||||| targets:6   AUCCAGUAGCGUCCUCUAAAUUUA   29 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ099679.1	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   |||||=||==|||||||||||||| targets:103   AUCCAGCAGUGUCCUCUAAAUUUA   126 Target Full Sequence	3.0	TSA: Zea mays contig35334, mRNA sequence	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   ||=||=||=||||||||||||||| targets:9   AUUCAGCAGCGUCCUCUAAAUUUA   32 Target Full Sequence	2.0	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237980.1	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   ||=||=||=||||||||||||||| targets:9   AUUCAGCAGCGUCCUCUAAAUUUA   32 Target Full Sequence	2.0	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   ||=||=||=||||||||||||||| targets:9   AUUCAGCAGCGUCCUCUAAAUUUA   32 Target Full Sequence	2.0	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   =|=|*=||=||||||||||||||* targets:574   GUUCUGCAGCGUCCUCUAAAUUUC   597 Target Full Sequence	3.0	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget
XM_008683257.2	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   *|=||=|||||||||||||||||* targets:4149   UUUCAGCAACGUCCUCUAAAUUUC   4172 Target Full Sequence	2.0	PREDICTED: Zea mays Tubulin-folding cofactor D (LOC100273796), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943703.1	ncRNA:24   UAGGUUGUUGCAGGAGAUUUAAAU   1   *|=||=||||*||||||||||||* targets:78   CUUCAGCAACUUCCUCUAAAUUUC   101 Target Full Sequence	3.0	Zea mays clone 1679827 mRNA sequence	NA	coding protein	psRNATarget