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BaseInfo

ncRNA ID	novel_zma_miR15287
Species	Zea mays
Class	miRNA
Genome position	Chr4:77039693-77039901 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	186 - CUUGUAUUGAGGUGGAUUGGGGUG - 209
Stem-loop(if miRNA)	--CU   A                     U   AAC   U        C            C   U                          C     A AG       UGU UUGAGGUGGAUUGGGGUGUAA UUA   UAA UUACACCC AAUCCACCUCAA ACA GUGGAUUGAGGUCAAUACUAGAGUAC CAAAC A  CCU     ||| ||||||||||||||||||||| |||   ||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||| |  ||U     ACA AACUCCACCUAACCCCACAUU AAU   AUU AAUGUGGG UUAGGUGGAGUU UGU CACCUAACUCUAGUUAUGAUCUCAUG GUUUG U  GGA GUGU   C                     U   CAA   C        A            A   U                          A     A CU
Stem-loop sequence	CUUGUAUUGAGGUGGAUUGGGGUGUAAUUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGUGGAUUGAGGUCAAUACUAGAGUACCCAAACAAAGCCUUAGGUCUAGUUUGAGUACUCUAGUAUUGAUCUCAAUCCACUUGUAUUGAGGUGGAUUAGGGUGUAACUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235449.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||||||||=|||||||||||||| targets:63   CACCCCAAUUCACCUCAAUACAAG   86 Target Full Sequence	1.0	Sequence 1444 from Patent EP2985353	NA	coding protein	psRNATarget
HI403319.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||||||||=|||||||||||||| targets:63   CACCCCAAUUCACCUCAAUACAAG   86 Target Full Sequence	1.0	Sequence 1444 from Patent EP2074227	NA	coding protein	psRNATarget
JB163780.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||||||||=|||||||||||||| targets:63   CACCCCAAUUCACCUCAAUACAAG   86 Target Full Sequence	1.0	Sequence 1444 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||||||||||||||||||||*| targets:62   CACCCCAAUCCACCUCAAUACAUG   85 Target Full Sequence	1.5	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
JB163527.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||||||||||||||||||||*| targets:62   CACCCCAAUCCACCUCAAUACAUG   85 Target Full Sequence	1.5	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
HI403066.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||||||||||||||||||||*| targets:62   CACCCCAAUCCACCUCAAUACAUG   85 Target Full Sequence	1.5	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
HI407232.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|||==|||||||||||||||||| targets:24   AACCUUAAUCCACCUCAAUACAAG   47 Target Full Sequence	1.0	Sequence 5357 from Patent EP2074227	NA	coding protein	psRNATarget
JB167693.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|||==|||||||||||||||||| targets:24   AACCUUAAUCCACCUCAAUACAAG   47 Target Full Sequence	1.0	Sequence 5357 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239362.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|||==|||||||||||||||||| targets:24   AACCUUAAUCCACCUCAAUACAAG   47 Target Full Sequence	1.0	Sequence 5357 from Patent EP2985353	NA	coding protein	psRNATarget
EU963469.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|||==|||||||||||||||||| targets:974   AACCUUAAUCCACCUCAAUACAAG   997 Target Full Sequence	1.0	Zea mays clone 263014 mRNA sequence	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||||=||||||||||||||||*| targets:61   CACCCUAAUCCACCUCAAUACAUG   84 Target Full Sequence	2.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||||=||||||||||||||||*| targets:61   CACCCUAAUCCACCUCAAUACAUG   84 Target Full Sequence	2.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||||=||||||||||||||||*| targets:61   CACCCUAAUCCACCUCAAUACAUG   84 Target Full Sequence	2.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
EZ069719.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||||=||||||||||||||||*| targets:54   CACCCUAAUCCACCUCAAUACAUG   77 Target Full Sequence	2.5	TSA: Zea mays contig05355, mRNA sequence	NA	coding protein	psRNATarget
EU941642.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||=|||||||||||||||||*| targets:11   CACCUCAAUCCACCUCAAUACAUG   34 Target Full Sequence	1.5	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||=|||||||||||||||||*| targets:884   CACCUCAAUCCACCUCAAUACAUG   907 Target Full Sequence	1.5	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||=|||||||||||||||||*| targets:884   CACCUCAAUCCACCUCAAUACAUG   907 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235622.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||=|=||||||||||||||||*| targets:77   CACUCUAAUCCACCUCAAUACAUG   100 Target Full Sequence	2.5	Sequence 1617 from Patent EP2985353	NA	coding protein	psRNATarget
JB163953.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||=|=||||||||||||||||*| targets:77   CACUCUAAUCCACCUCAAUACAUG   100 Target Full Sequence	2.5	Sequence 1617 from Patent EP2559767	NA	coding protein	psRNATarget
HI403492.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||=|=||||||||||||||||*| targets:77   CACUCUAAUCCACCUCAAUACAUG   100 Target Full Sequence	2.5	Sequence 1617 from Patent EP2074227	NA	coding protein	psRNATarget
JB167199.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|=|||||||||||||||||||*| targets:65   GAUCCCAAUCCACCUCAAUACAUG   88 Target Full Sequence	1.5	Sequence 4863 from Patent EP2559767	NA	coding protein	psRNATarget
HI406738.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|=|||||||||||||||||||*| targets:65   GAUCCCAAUCCACCUCAAUACAUG   88 Target Full Sequence	1.5	Sequence 4863 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238868.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|=|||||||||||||||||||*| targets:65   GAUCCCAAUCCACCUCAAUACAUG   88 Target Full Sequence	1.5	Sequence 4863 from Patent EP2985353	NA	coding protein	psRNATarget
EU963895.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|=|||||||||||||||||||*| targets:981   GAUCCCAAUCCACCUCAAUACAUG   1004 Target Full Sequence	1.5	Zea mays clone 273839 protein SFT2 mRNA, complete cds	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   *|==||||||||||||||||||*| targets:1192   AAUUCCAAUCCACCUCAAUACAUG   1215 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||*=||||||||||||||||*| targets:61   CACCAUAAUCCACCUCAAUACAUG   84 Target Full Sequence	2.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
JB163427.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||*=||||||||||||||||*| targets:61   CACCAUAAUCCACCUCAAUACAUG   84 Target Full Sequence	2.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
HI402966.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   ||||*=||||||||||||||||*| targets:61   CACCAUAAUCCACCUCAAUACAUG   84 Target Full Sequence	2.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020550625.1	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||=||||*|||||||||||||*| targets:2943   CACUCCAAACCACCUCAAUACACG   2966 Target Full Sequence	2.5	PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA	NA	coding protein	psRNATarget
XM_008677341.2	ncRNA:24   GUGGGGUUAGGUGGAGUUAUGUUC   1   |||=||||*|||||||||||||*| targets:2959   CACUCCAAACCACCUCAAUACACG   2982 Target Full Sequence	2.5	PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA	NA	coding protein	psRNATarget