Search result

BaseInfo

ncRNA ID	novel_zma_miR15280
Species	Zea mays
Class	miRNA
Genome position	Chr4:205226981-205227032 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - CCCAUCGGGUUUUGGGUUUCGGGU - 24
Stem-loop(if miRNA)	--  -       -U    UA     GU   CC AAACCCG  ACCC  AUGGG  A   || |||||||  ||||  |||||  A   GG UUUGGGU  UGGG  UACCC  A UG  C       UU    -C     AA
Stem-loop sequence	CCAAACCCGUACCCUAAUGGGGUAAAAACCCAUCGGGUUUUGGGUUUCGGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942434.1	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   |||||||||||||||||||||||| targets:838   ACCCGAAACCCAAAACCCGAUGGG   861 Target Full Sequence	0.0	Zea mays clone 1498794 mRNA sequence	NA	coding protein	psRNATarget
LQ237949.1	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   |||||||||||=|||||||||||| targets:10   ACCCGAAACCCGAAACCCGAUGGG   33 Target Full Sequence	1.5	Sequence 3944 from Patent EP2985353	NA	coding protein	psRNATarget
HI405819.1	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   |||||||||||=|||||||||||| targets:10   ACCCGAAACCCGAAACCCGAUGGG   33 Target Full Sequence	1.5	Sequence 3944 from Patent EP2074227	NA	coding protein	psRNATarget
JB166280.1	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   |||||||||||=|||||||||||| targets:10   ACCCGAAACCCGAAACCCGAUGGG   33 Target Full Sequence	1.5	Sequence 3944 from Patent EP2559767	NA	coding protein	psRNATarget
BT084992.1	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   |||||||||||=|||||||||||| targets:878   ACCCGAAACCCGAAACCCGAUGGG   901 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0222N10 mRNA, complete cds	NA	coding protein	psRNATarget
EU945315.1	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   |||||||||||=|||||||||||| targets:790   ACCCGAAACCCGAAACCCGAUGGG   813 Target Full Sequence	1.5	Zea mays clone 257965 mRNA sequence	NA	coding protein	psRNATarget
NM_001112293.3	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   |||||||||||=|||||||||||| targets:2226   ACCCGAAACCCGAAACCCGAUGGG   2249 Target Full Sequence	1.5	Zea mays protein disulfide isomerase 5 (pdi5), mRNA	NA	coding protein	psRNATarget
XM_020538185.1	ncRNA:24   UGGGCUUUGGGUUUUGGGCUACCC   1   ||||-||*|||||||=|||||||| targets:592   ACCC-AACCCCAAAAUCCGAUGGG   614 Target Full Sequence	2.5	PREDICTED: Zea mays dehydration-responsive element-binding protein 1F-like (LOC103627305), mRNA	NA	coding protein	psRNATarget