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BaseInfo

ncRNA ID	novel_zma_miR15274
Species	Zea mays
Class	miRNA
Genome position	Chr4:230910167-230910298 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AGGACAUGUUUGGUUUGUGGCUAA - 24
Stem-loop(if miRNA)	--   AC             G   AAAUG     C     ---AU  AAGGUUAGUCGUUCAAAUUG   AGG  AUGUUUGGUUUGU GCU     UGUCA ACUUU     CU                    A   |||  ||||||||||||| |||     ||||| |||||     ||                    A   UCC  UACAAAUCAAGCA UGG     ACAGU UGAAA     UG                    U AU   CA             A   AGUUA     A     CAGAU  AAAAGACGGAUUCCAAUCAA
Stem-loop sequence	AGGACAUGUUUGGUUUGUGGCUAAAUGUGUCACACUUUAUCUAAGGUUAGUCGUUCAAAUUGAAUAACUAACCUUAGGCAGAAAAGUUAGACAAAGUAUGACAAUUGAGGUAACGAACUAAACAUACCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543351.1	ncRNA:24   AAUCGGUGUUUGGUUUGUACAGGA   1   ||||||||||||||||||||*||| targets:887   UUAGCCACAAACCAAACAUGCCCU   910 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ086875.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUACAGGA   1   ||||=||-||||||||||||||||| targets:11   UUAGUCAUCAAACCAAACAUGUCCU   35 Target Full Sequence	2.0	TSA: Zea mays contig22521, mRNA sequence	NA	coding protein	psRNATarget
EZ107480.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUACAGGA   1   ||||=||-||||||||||||||||| targets:40   UUAGUCAUCAAACCAAACAUGUCCU   64 Target Full Sequence	2.0	TSA: Zea mays contig43138, mRNA sequence	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   AAUCGGUGUUUGGUUUGUACAGGA   1   ||||||||=|||||||||||||*| targets:107   UUAGCCACGAACCAAACAUGUCAU   130 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   AAUCGGUGUUUGGUUUGUACAGGA   1   ||||||||=|||||||||||||*| targets:107   UUAGCCACGAACCAAACAUGUCAU   130 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   AAUCGGUGUUUGGUUUGUACAGGA   1   ||||||||=|||||||||||||*| targets:107   UUAGCCACGAACCAAACAUGUCAU   130 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
EZ060798.1	ncRNA:24   AAU-CGGUGUUUGGUUUGUACAGGA   1   ||=-||||||||||||||||||=|* targets:192   UUGUGCCACAAACCAAACAUGUUCA   216 Target Full Sequence	2.5	TSA: Zea mays contig61920, mRNA sequence	NA	coding protein	psRNATarget
EU950960.1	ncRNA:24   AAU-CGGUGUUUGGUUUGUACAGGA   1   ||=-||||||||||||||||||=|* targets:175   UUGUGCCACAAACCAAACAUGUUCA   199 Target Full Sequence	2.5	Zea mays clone 677055 mRNA sequence	NA	coding protein	psRNATarget
XM_008650467.2	ncRNA:24   AAU-CGGUGUUUGGUUUGUACAGGA   1   ||=-||||||||||||||||||=|* targets:523   UUGUGCCACAAACCAAACAUGUUCA   547 Target Full Sequence	2.5	PREDICTED: Zea mays enoyl-CoA hydratase 2, peroxisomal (LOC103629303), mRNA	NA	coding protein	psRNATarget
XM_008671335.2	ncRNA:24   AAU-CGGUGUUUGGUUUGUACAGGA   1   ||=-||||||||||||||||||=|* targets:1448   UUGUGCCACAAACCAAACAUGUUCA   1472 Target Full Sequence	2.5	PREDICTED: Zea mays actin-like (LOC103646627), mRNA	NA	coding protein	psRNATarget