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BaseInfo

ncRNA ID novel_zma_miR15255
Species Zea mays
Class miRNA
Genome position Chr10:19774971-19775071 [-]
Reference genome RefGen_v4
Source SRR2089708
Length 24
Mature sequence(if miRNA) 78 - GUACCCCGGGUGUGCGGUCGGACA - 101
Stem-loop(if miRNA) --    C   G    G   U    CA      A   ACAA     CC   G U
  GUAC CCG GUGU CGG CGGA  CUAAAC CCG    UGUCA  AGC U A
  |||| ||| |||| ||| ||||  |||||| |||    |||||  ||| | C
  CGUG GGU UACA GUU GCCU  GGUUUG GGC    GCGGU  UCG A G
CU    U   G    G   U    -A      -   ----     AC   G U
Stem-loop sequence GUACCCCGGGUGUGCGGUCGGACACUAAACACCGACAAUGUCACCAGCGUUACGUAGGCUCAUGGCGCGGGUUUGGAUCCGUUUGGACAUGUGGUGUGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008680077.2
ncRNA:24   ACAGGCUGGCGUGUGGGCCCCAUG   1
  *|||||||||||||||||||||**
targets:696   GGUCCGACCGCACACCCGGGGUUG   719

2.5 PREDICTED: Zea mays formin-like protein 3 (LOC103653113), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542440.1
ncRNA:24   ACAGGCUGGCGUGUGGGCCCCAUG   1
  *|||||||||||||||||||||**
targets:4567   GGUCCGACCGCACACCCGGGGUUG   4590

2.5 PREDICTED: Zea mays uncharacterized LOC109941458 (LOC109941458), mRNA NA coding protein psRNATarget
EU949251.1
ncRNA:24   ACA-------GGCUGGCGUGUGGGCCCCA-UG   1
  |||-------|||||||||||||||||||-||
targets:337   UGUUUGGAGCCCGACCGCACACCCGGGGUUAC   368

3.0 Zea mays clone 400160 mRNA sequence NA coding protein psRNATarget