Search result

BaseInfo

ncRNA ID	novel_zma_miR15249
Species	Zea mays
Class	miRNA
Genome position	Chr3:230328923-230328995 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GUAGAUUGUACUGUUCGCAGAGUG - 24
Stem-loop(if miRNA)	--G     -         UC A   UUCACUAAAAAA    UCUGC AACAGUAUA  C UAG            A    ||||| |||||||||  | |||    AGACG UUGUCAUGU  G UGU            C GUG     C         UA A   UACGUUUUGUUA
Stem-loop sequence	GUCUGCAACAGUAUAUCCAUAGUUCACUAAAAAAACAUUGUUUUGCAUUGUAGAUUGUACUGUUCGCAGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ079964.1	ncRNA:24   GUGAGACGCUUGUCAUGUUAGAUG   1   |||*=||||||||||||||||||| targets:29   CACCUUGCGAACAGUACAAUCUAC   52 Target Full Sequence	0.0	TSA: Zea mays contig15603, mRNA sequence	NA	coding protein	psRNATarget
XM_020550050.1	ncRNA:24   GUGAGACGCUUGUCAUGUUAGAUG   1   ||||||||*||||||=|||||||| targets:1062   CACUCUGCAAACAGUGCAAUCUAC   1085 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC541932 (umc1540), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT086351.1	ncRNA:24   GUGAGACGCUUGUCAUGUUAGAUG   1   ||||||||*||=|||||||||||| targets:1073   CACUCUGCAAAUAGUACAAUCUAC   1096 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0155F21 mRNA, complete cds	NA	coding protein	psRNATarget
EZ106567.1	ncRNA:24   GUGA----GACGCUUGUCAUGUUAGAUG   1   =|||----||*|||||||||||=||||| targets:59   UACUUAUCCUACGAACAGUACAGUCUAC   86 Target Full Sequence	2.5	TSA: Zea mays contig42225, mRNA sequence	NA	coding protein	psRNATarget
BT016910.1	ncRNA:24   GUGAGACGCUUGUCAUGUUAGAUG   1   ||*|=|*=*||||||||||||||| targets:123   CAAUUUAUAAACAGUACAAUCUAC   146 Target Full Sequence	3.0	Zea mays clone Contig743 mRNA sequence	NA	coding protein	psRNATarget