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BaseInfo

ncRNA ID	novel_zma_miR15244
Species	Zea mays
Class	miRNA
Genome position	Chr3:170942741-170942880 [+]
Reference genome	RefGen_v4
Source	SRR2089708
Length	21
Mature sequence(if miRNA)	1 - GAUUAUGGUGGAAGGGUAGGA - 21
Stem-loop(if miRNA)	--       G           GAU         G      A       A     G            CCC   GAUUAUG UGGAAGGGUAG   GGUAAAUAU ACUUUG GAUUACA AUAAG UGAAAUAAGCUA   A   ||||||| |||||||||||   ||||||||| |||||| ||||||| ||||| ||||||||||||   CUAAUAC ACCUUCCUAUC   CCAUUUAUA UGAAAC CUGAUGU UAUUU ACUUUAUUCGAU   A AC       A           AUC         G      C       C     G            UGU
Stem-loop sequence	GAUUAUGGUGGAAGGGUAGGAUGGUAAAUAUGACUUUGAGAUUACAAAUAAGGUGAAAUAAGCUACCCAAUGUUAGCUUAUUUCAGUUUAUCUGUAGUCCCAAAGUGAUAUUUACCCUACUAUCCUUCCAACAUAAUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087535.1	ncRNA:21   AGGAUGGGAAGGUGGUAUUAG   1   ||||==||||||||||||||| targets:191   UCCUGUCCUUCCACCAUAAUC   211 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0104B17 mRNA, complete cds	NA	coding protein	psRNATarget
BT084593.2	ncRNA:21   AGGAUGGGAAGGUGGUAUUAG   1   |=||||=||||||||=||||| targets:5   UUCUACUCUUCCACCGUAAUC   25 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0138P10 mRNA, complete cds	NA	coding protein	psRNATarget
EU975471.1	ncRNA:21   AGGAUGGGAAGGUGGUAUUAG   1   |=||||=|||=|||||||||| targets:801   UUCUACUCUUUCACCAUAAUC   821 Target Full Sequence	2.5	Zea mays clone 490696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036602.1	ncRNA:21   AGGAUGGGAAGGUGGUAUUAG   1   |=||||||||*|||||||||| targets:1068   UUCUACCCUUACACCAUAAUC   1088 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139196.1	ncRNA:21   AGGAUGGGAAGGUGGUAUUAG   1   |=||||||||*|||||||||| targets:1068   UUCUACCCUUACACCAUAAUC   1088 Target Full Sequence	1.5	Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA	NA	coding protein	psRNATarget
NM_001152434.1	ncRNA:21   AGGAUGGGAAGGUGGUAUUAG   1   |=|||||=|||||||||||*| targets:1005   UUCUACCUUUCCACCAUAACC   1025 Target Full Sequence	2.5	Zea mays FIP1 (LOC100279424), mRNA	NA	coding protein	psRNATarget
BT054221.1	ncRNA:21   AGGAUGGGAAGGUGGUAUUAG   1   |=|||||=|||||||||||*| targets:1005   UUCUACCUUUCCACCAUAACC   1025 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0178P02 mRNA, complete cds	NA	coding protein	psRNATarget