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BaseInfo

ncRNA ID	novel_zma_miR15237
Species	Zea mays
Class	miRNA
Genome position	Chr1:263589544-263589672 [-]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	106 - AGGUCUUAUUCGUUUGUGUCGGAU - 129
Stem-loop(if miRNA)	--A   C  A                  --GU    -  GAACGAUUCCUAGCGGAUUGCUUCUCU    GGU UU UUCGUUUGUGUCGGAUUG    GGAU CG                           A    ||| || ||||||||||||||||||    |||| ||    CCG AA AAGCAAAUGCGGCCUAAC    GCCU AC                           A AAC   U  C                  GUGG    U  CAAGGUCGAUUAGUUUUAAAUAUAUUU
Stem-loop sequence	AGGUCUUAUUCGUUUGUGUCGGAUUGGUGGAUCGGAACGAUUCCUAGCGGAUUGCUUCUCUAAUUUAUAUAAAUUUUGAUUAGCUGGAACCAUUCCGGGUGCAAUCCGGCGUAAACGAACAAUGCCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238070.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   ||=|||||||||||||*||||||| targets:111   AUUCGACACAAACGAACAAGACCU   134 Target Full Sequence	1.5	Sequence 4065 from Patent EP2985353	NA	coding protein	psRNATarget
HI405940.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   ||=|||||||||||||*||||||| targets:111   AUUCGACACAAACGAACAAGACCU   134 Target Full Sequence	1.5	Sequence 4065 from Patent EP2074227	NA	coding protein	psRNATarget
JB166401.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   ||=|||||||||||||*||||||| targets:111   AUUCGACACAAACGAACAAGACCU   134 Target Full Sequence	1.5	Sequence 4065 from Patent EP2559767	NA	coding protein	psRNATarget
HI405935.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:109   AUCCGGCACAAACGAACAAGACCU   132 Target Full Sequence	2.5	Sequence 4060 from Patent EP2074227	NA	coding protein	psRNATarget
JB166396.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:109   AUCCGGCACAAACGAACAAGACCU   132 Target Full Sequence	2.5	Sequence 4060 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238065.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:109   AUCCGGCACAAACGAACAAGACCU   132 Target Full Sequence	2.5	Sequence 4060 from Patent EP2985353	NA	coding protein	psRNATarget
EU974791.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:574   AUCCGGCACAAACGAACAAGACCU   597 Target Full Sequence	2.5	Zea mays clone 458239 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975407.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:573   AUCCGGCACAAACGAACAAGACCU   596 Target Full Sequence	2.5	Zea mays clone 489701 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138328.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:1319   AUCCGGCACAAACGAACAAGACCU   1342 Target Full Sequence	2.5	Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA	NA	coding protein	psRNATarget
BT035367.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:1319   AUCCGGCACAAACGAACAAGACCU   1342 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds	NA	coding protein	psRNATarget
EU972216.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:1337   AUCCGGCACAAACGAACAAGACCU   1360 Target Full Sequence	2.5	Zea mays clone 377576 mRNA sequence	NA	coding protein	psRNATarget
NM_001175834.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:956   AUCCGGCACAAACGAACAAGACCU   979 Target Full Sequence	2.5	Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA	NA	coding protein	psRNATarget
BT066445.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   |||||=||||||||||*||||||| targets:956   AUCCGGCACAAACGAACAAGACCU   979 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds	NA	coding protein	psRNATarget
BT068430.1	ncRNA:24   UAGGCUGUGUUUGCUUAUUCUGGA   1   ||||||||*|||||||*||||||| targets:557   AUCCGACAGAAACGAACAAGACCU   580 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds	NA	coding protein	psRNATarget