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BaseInfo

ncRNA ID osa-miRf11120-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - CCCAGUUGGUAGUAACAACCGGGA - NA
Stem-loop(if miRNA)         G    A    A          C          AUUAUCA         C       
GAUCUUUA UCCC GUUG UACUACCAAC GGGACUAAAG       CUUUAGUCC GGUUGAUA
|||||||| |||| |||| |||||||||| ||||||||||       ||||||||| |||||||C
CUAGAAAU AGGG CAAC AUGAUGGUUG CCCUGAUUUC       GAAAUCAGG CCAACUAU
        G    C    A          A          ACUAUUA         A       
Stem-loop sequence GAUCUUUAGUCCCAGUUGAUACUACCAACCGGGACUAAAGAUUAUCACUUUAGUCCCGGUUGAUACUAUCAACCAGGACUAAAGAUUAUCACUUUAGUCCCAGUUGGUAGUAACAACCGGGAGUAAAGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI404518.1
ncRNA:24   AGGGCCAACAAUGAUGGUUGACCC   1
  |=|||||||*||*|||||||||||
targets:4   UUCCGGUUGGUAAUACCAACUGGG   27

2.5 Sequence 2643 from Patent EP2074227 NA coding protein psRNATarget
LQ236648.1
ncRNA:24   AGGGCCAACAAUGAUGGUUGACCC   1
  |=|||||||*||*|||||||||||
targets:4   UUCCGGUUGGUAAUACCAACUGGG   27

2.5 Sequence 2643 from Patent EP2985353 NA coding protein psRNATarget
JB164979.1
ncRNA:24   AGGGCCAACAAUGAUGGUUGACCC   1
  |=|||||||*||*|||||||||||
targets:4   UUCCGGUUGGUAAUACCAACUGGG   27

2.5 Sequence 2643 from Patent EP2559767 NA coding protein psRNATarget
XM_015759969.1
ncRNA:24   AGGGCCAACAAUGAUGGUUGACCC   1
  |=|*|||||*||||||||||||||
targets:1930   UUCAGGUUGAUACUACCAACUGGG   1953

1.0 PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA F-box/LRR-repeat protein At3g58930(LOC9269963) coding protein psRNATarget
XM_015759968.1
ncRNA:24   AGGGCCAACAAUGAUGGUUGACCC   1
  |=|*|||||*||||||||||||||
targets:3428   UUCAGGUUGAUACUACCAACUGGG   3451

1.0 PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA F-box/LRR-repeat protein At3g58930(LOC9269963) coding protein psRNATarget