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BaseInfo

ncRNA ID	novel_zma_miR15227
Species	Zea mays
Class	miRNA
Genome position	Chr1:303412117-303412187 [-]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	48 - GGAUCCAUGGGGAGAAAUUCACUU - 71
Stem-loop(if miRNA)	--              -A     A    CA     A   GGAUCCAUGGGGAG  AAUUC CUUG  AUUCA U   ||||||||||||||  ||||| ||||  |||||   CUUAGGUACCUCUU  UUAGG GAAC  UAAGU U CC              CC     G    AA     U
Stem-loop sequence	GGAUCCAUGGGGAGAAAUUCACUUGCAAUUCAAUUUUGAAUAACAAGGGGAUUCCUUCUCCAUGGAUUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239042.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|=|||*|||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUCC   77 Target Full Sequence	2.0	Sequence 5037 from Patent EP2985353	NA	coding protein	psRNATarget
JB167373.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|=|||*|||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUCC   77 Target Full Sequence	2.0	Sequence 5037 from Patent EP2559767	NA	coding protein	psRNATarget
HI406912.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|=|||*|||||||||||||| targets:54   AAGGGGAUUCCUCCCCAUGGAUCC   77 Target Full Sequence	2.0	Sequence 5037 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008660085.2	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|||||*||||=||||||||| targets:1492   AAGGGAAUUCCUCCUCAUGGAUCC   1515 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274129 (LOC100274129), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238863.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|=|||*=||||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUCC   85 Target Full Sequence	3.0	Sequence 4858 from Patent EP2985353	NA	coding protein	psRNATarget
HI406733.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|=|||*=||||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUCC   85 Target Full Sequence	3.0	Sequence 4858 from Patent EP2074227	NA	coding protein	psRNATarget
JB167194.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|=|||*=||||||||||||| targets:62   AAGGGGAUUCUUCCCCAUGGAUCC   85 Target Full Sequence	3.0	Sequence 4858 from Patent EP2559767	NA	coding protein	psRNATarget
EU948260.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|=|||*=||||||||||||| targets:393   AAGGGGAUUCUUCCCCAUGGAUCC   416 Target Full Sequence	3.0	Zea mays clone 371984 mRNA sequence	NA	coding protein	psRNATarget
BT068562.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   =||*|=|||*|||||||||||||| targets:1046   GAGGGGAUUCCUCCCCAUGGAUCC   1069 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds	NA	coding protein	psRNATarget
JB163408.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|*|||*|||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUCC   106 Target Full Sequence	2.0	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
HI402947.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|*|||*|||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUCC   106 Target Full Sequence	2.0	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235077.1	ncRNA:24   UUCACUUAAAGAGGGGUACCUAGG   1   |||*|*|||*|||||||||||||| targets:83   AAGGGUAUUCCUCCCCAUGGAUCC   106 Target Full Sequence	2.0	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget