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BaseInfo

ncRNA ID	novel_zma_miR15220
Species	Zea mays
Class	miRNA
Genome position	Chr9:139668951-139669031 [-]
Reference genome	RefGen_v4
Source	SRR1583943
Length	23
Mature sequence(if miRNA)	59 - AAUCUAUCUAGAUUAUAUAAUCU - 81
Stem-loop(if miRNA)	--   C                   ----          AAA   AAU UAUCUAGAUUAUAUAAUCU    UAUUUUGAAC   C   ||| |||||||||||||||||||    ||||||||||   U   UUA AUAGAUUUAAUAUAUUAGA    AUAAAACUUG   C UA   U                   UUGA          AUU
Stem-loop sequence	AAUCUAUCUAGAUUAUAUAAUCUUAUUUUGAACAAACUCUUAGUUCAAAAUAAGUUAGAUUAUAUAAUUUAGAUAUAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008669523.2	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   |||||||||||||||||*||||| targets:2108   AGAUUAUAUAAUCUAGACAGAUU   2130 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY105541.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   |||||||||||||||*||||||| targets:2091   AGAUUAUAUAAUCUAAAUAGAUU   2113 Target Full Sequence	1.5	Zea mays PCO077463 mRNA sequence	NA	coding protein	psRNATarget
XM_008681303.2	ncRNA:23   UCUAAUAUAUUAGAUCUA-UCUAA   1   =|||||||||||||||||-||||| targets:2123   GGAUUAUAUAAUCUAGAUUAGAUU   2146 Target Full Sequence	3.0	PREDICTED: Zea mays F-box protein At-B (LOC103654475), mRNA	NA	coding protein	psRNATarget
EU977031.1	ncRNA:23   UCUAAUAUAUUAGAUCUA-UCUAA   1   =|||||||||||||||||-||||| targets:466   GGAUUAUAUAAUCUAGAUUAGAUU   489 Target Full Sequence	3.0	Zea mays clone 996758 mRNA sequence	NA	coding protein	psRNATarget
XM_008657785.2	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =||||||||||||||*||||||| targets:2342   GGAUUAUAUAAUCUAAAUAGAUU   2364 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA	NA	coding protein	psRNATarget
BT053896.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   |||||||||=|||||||*||||| targets:1640   AGAUUAUAUGAUCUAGACAGAUU   1662 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019L09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152270.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   |||||||||=|||||||*||||| targets:1640   AGAUUAUAUGAUCUAGACAGAUU   1662 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279249 (LOC100279249), mRNA	NA	coding protein	psRNATarget
EU949179.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   |*||||||||||||||=|||||| targets:70   AAAUUAUAUAAUCUAGGUAGAUU   92 Target Full Sequence	1.5	Zea mays clone 398195 mRNA sequence	NA	coding protein	psRNATarget
EZ078154.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =||||||||||||||*||||||| targets:44   GGAUUAUAUAAUCUAUAUAGAUU   66 Target Full Sequence	1.5	TSA: Zea mays contig13793, mRNA sequence	NA	coding protein	psRNATarget
EZ061911.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   |||||||||*|||||*||||||| targets:437   AGAUUAUAUUAUCUAAAUAGAUU   459 Target Full Sequence	2.5	TSA: Zea mays contig63033, mRNA sequence	NA	coding protein	psRNATarget
XM_020547943.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =*|||||||||||||||*||||| targets:3414   GAAUUAUAUAAUCUAGACAGAUU   3436 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =*|||||||||||||||*||||| targets:3399   GAAUUAUAUAAUCUAGACAGAUU   3421 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =*|||||||||||||||*||||| targets:3270   GAAUUAUAUAAUCUAGACAGAUU   3292 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =*|||||||||||||||*||||| targets:1285   GAAUUAUAUAAUCUAGACAGAUU   1307 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =*|||||||||||||||*||||| targets:1285   GAAUUAUAUAAUCUAGACAGAUU   1307 Target Full Sequence	1.5	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
EU945446.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   **|*||||||||||=|||||||| targets:481   CUAAUAUAUAAUCUGGAUAGAUU   503 Target Full Sequence	1.5	Zea mays clone 273503 mRNA sequence	NA	coding protein	psRNATarget
XM_020543182.1	ncRNA:23   UCUAAUAUAUUAGAUCUAUCUAA   1   =**|||||||||*|||||||||* targets:717   GUUUUAUAUAAUAUAGAUAGAUC   739 Target Full Sequence	2.5	PREDICTED: Zea mays ras-related protein RABA1f-like (LOC103637397), partial mRNA	NA	coding protein	psRNATarget