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BaseInfo

ncRNA ID	novel_zma_miR15218
Species	Zea mays
Class	miRNA
Genome position	Chr1:2990478-2990588 [-]
Reference genome	RefGen_v4
Source	SRR2089707
Length	24
Mature sequence(if miRNA)	88 - GGUUGCGUCUGGAUCGAAGGGGAU - 111
Stem-loop(if miRNA)	--                     GAUUG                AUC   AG    AA   GGUUGCGUCUGGAUCGAAGGG     GAGGGGGAUUAAAUCC   CCU  UCAA  U   |||||||||||||||||||||     ||||||||||||||||   |||  ||||  U   CCGACGUAGACCUAGCUUCCC     UUCCCCCUAAUUUAGG   GGA  AGUU  G AG                     -AUAA                ---   --    AA
Stem-loop sequence	GGUUGCGUCUGGAUCGAAGGGGAUUGGAGGGGGAUUAAAUCCAUCCCUAGUCAAAAUUGAAUUGAAGGGGAUUUAAUCCCCCUUAAUACCCUUCGAUCCAGAUGCAGCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238077.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||||||||||||=|||| targets:100   AUCCCCUUCGAUCCAGACGUAACC   123 Target Full Sequence	1.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||||||||||||=|||| targets:100   AUCCCCUUCGAUCCAGACGUAACC   123 Target Full Sequence	1.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||||||||||||=|||| targets:100   AUCCCCUUCGAUCCAGACGUAACC   123 Target Full Sequence	1.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||||||||||||=|||| targets:100   AUCCCCUUCGAUCCAGACGUAACC   123 Target Full Sequence	1.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||||||||||||=|||| targets:100   AUCCCCUUCGAUCCAGACGUAACC   123 Target Full Sequence	1.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||||||||||||=|||| targets:100   AUCCCCUUCGAUCCAGACGUAACC   123 Target Full Sequence	1.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
EU946897.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   ||||=||||||||||||||||||| targets:306   AUCCUCUUCGAUCCAGACGCAACC   329 Target Full Sequence	0.0	Zea mays clone 324711 mRNA sequence	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   ||||||||||||||||=||||||| targets:1414   AUCCCCUUCGAUCCAGGCGCAACC   1437 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
BT017268.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   ||||||||=||||=|||||||||| targets:922   AUCCCCUUUGAUCUAGACGCAACC   945 Target Full Sequence	2.5	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||*|||||||||||*|| targets:93   AUCCCCUUCAAUCCAGACGCACCC   116 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||*|||||||||||*|| targets:93   AUCCCCUUCAAUCCAGACGCACCC   116 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||||*|||||||||||*|| targets:93   AUCCCCUUCAAUCCAGACGCACCC   116 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
AY110278.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |*|==|||=||||||||||||||| targets:188   ACCUUCUUUGAUCCAGACGCAACC   211 Target Full Sequence	1.0	Zea mays CL14707_1 mRNA sequence	NA	coding protein	psRNATarget
BT068750.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||||||*|*|||||||||||||| targets:134   AUCCCCUCCAAUCCAGACGCAACC   157 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0377I06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543715.1	ncRNA:24   UAGGGGAAGCUAGGUCUGCGUUGG   1   |||==||*=||||||||||||||| targets:1616   AUCUUCUCUGAUCCAGACGCAACC   1639 Target Full Sequence	2.0	PREDICTED: Zea mays myosin heavy chain-related (cl7835_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget