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BaseInfo

ncRNA ID novel_zma_miR15205
Species Zea mays
Class miRNA
Genome position Chr10:145007570-145007731 [-]
Reference genome RefGen_v4
Source SRR2089707
Length 23
Mature sequence(if miRNA) 1 - GAGAUUACGUGCGGAGGAAGAUA - 23
Stem-loop(if miRNA) --              C  C C        -C  AA  UAUCCUCGCACUCCCUAAAGCUCCCACAUAUUGUUUGGUUUAGC
  UCUUCCUUCGCACG AA C CUAUGAUA  UC  AU                                            U
  |||||||||||||| || | ||||||||  ||  ||                                            U
  AGAAGGAGGCGUGC UU G GGUGCUAU  AU  CU                                            U
AU              A  A A        UG  --  AAGAGAGAUAUCAGGAUAAGCGGGGCGUCGGUCUAAGAGUUUUU
Stem-loop sequence UCUUCCUUCGCACGCAACCCCUAUGAUACUCAAAUUAUCCUCGCACUCCCUAAAGCUCCCACAUAUUGUUUGGUUUAGCUUUUUUUUGAGAAUCUGGCUGCGGGGCGAAUAGGACUAUAGAGAGAAUCUAGUUAUCGUGGAGAUUACGUGCGGAGGAAGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550407.1
ncRNA:23   AUAGAAGGAGGCGUGCAUUAGAG   1
  ||||||||||=|||||||||||*
targets:2951   UAUCUUCCUCUGCACGUAAUCUG   2973

2.5 PREDICTED: Zea mays putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D (LOC103650943), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008676547.2
ncRNA:23   AUAGAAGGAGGCGUGCAUUAGAG   1
  ||||||||||=|||||||||||*
targets:2999   UAUCUUCCUCUGCACGUAAUCUG   3021

2.5 PREDICTED: Zea mays putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D (LOC103650943), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675343.2
ncRNA:23   AUAGAAGGAGGCGUGCAUUAGAG   1
  |||||||=|=||||||||||||=
targets:24   UAUCUUCUUUCGCACGUAAUCUU   46

3.0 PREDICTED: Zea mays lecithin-cholesterol acyltransferase-like 1 (LOC103649606), mRNA NA coding protein psRNATarget
BT062376.1
ncRNA:23   AUAGAAGGAGGCGUGCAUUAGAG   1
  ||-|||*|||||||||||||||=
targets:140   UA-CUUACUCCGCACGUAAUCUU   161

2.0 Zea mays full-length cDNA clone ZM_BFb0289A15 mRNA, complete cds NA coding protein psRNATarget
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