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BaseInfo

ncRNA ID novel_zma_miR15202
Species Zea mays
Class miRNA
Genome position Chr1:285490314-285490475 [+]
Reference genome RefGen_v4
Source SRR2089707
Length 24
Mature sequence(if miRNA) 139 - AGGGAUGGAUUGAGGGGGAUUGGA - 162
Stem-loop(if miRNA) --         A       C U            G U    G  ---  UU  A       GUAUUAAU     ----     UU
  CAAUCUCUC CAAUCCA C CUUAUCGAACAA C CUAA GU   AU  AC UUGCAUG        UUAUU    UUAUA  U
  ||||||||| ||||||| | |||||||||||| | |||| ||   ||  || |||||||        |||||    |||||
  GUUAGGGGG GUUAGGU G GGAUGGCUUGUU G GAUU CA   UA  UG AAUGUAC        AAUAA    AAUAU  U
AG         A       A -            A U    G  CCC  UU  A       AAAACCCC     UUCU     UU
Stem-loop sequence CAAUCUCUCACAAUCCACCUCUUAUCGAACAAGCUCUAAGGUAUUUACAUUGCAUGGUAUUAAUUUAUUUUAUAUUUUUUUAUAAUCUUAAUAACCCCAAAACAUGUAAAGUUUAUCCCACGUUAGUGAUUGUUCGGUAGGGAUGGAUUGAGGGGGAUUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020552749.1
ncRNA:24   AGGUUAGGGGGAGUUAGGUAGGGA   1
  |||||||||||||||||||*||||
targets:3278   UCCAAUCCCCCUCAAUCCACCCCU   3301

1.5 PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA NA coding protein psRNATarget
XM_008661613.2
ncRNA:24   AGGUUAGGGGGAGUUAGGUAGGGA   1
  |||||||||=|||||||||*||||
targets:3046   UCCAAUCCCUCUCAAUCCACCCCU   3069

2.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008661611.2
ncRNA:24   AGGUUAGGGGGAGUUAGGUAGGGA   1
  |||||||||=|||||||||*||||
targets:3051   UCCAAUCCCUCUCAAUCCACCCCU   3074

2.5 PREDICTED: Zea mays two-component response regulator ORR25 (LOC103638799), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552796.1
ncRNA:24   AGGU--UAGGGGGAGUUAGGUAGGGA   1
  *|||--|||=||*||||||||||||*
targets:4675   ACCAUCAUCUCCGUCAAUCCAUCCCG   4700

3.0 PREDICTED: Zea mays uncharacterized LOC103654433 (LOC103654433), mRNA NA coding protein psRNATarget
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