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BaseInfo

ncRNA ID	novel_zma_miR15201
Species	Zea mays
Class	miRNA
Genome position	Chr1:24119559-24119659 [+]
Reference genome	RefGen_v4
Source	SRR2089707
Length	24
Mature sequence(if miRNA)	1 - GUGGAUUUUGACUAGUUGUGGAUU - 24
Stem-loop(if miRNA)	--                                                   GUGGAUUUUGACUAGUUGUGGAUUUAUUCCCCCUCAAUCCACAUAUCCA   ||||||||||||||||||||||||||||||||||||||||||||||||G   CACCUAAAACUGAUCAACACCUAAAUAAGGGGGAGUUAGGUGUAUAGGU UC
Stem-loop sequence	GUGGAUUUUGACUAGUUGUGGAUUUAUUCCCCCUCAAUCCACAUAUCCAGUGGAUAUGUGGAUUGAGGGGGAAUAAAUCCACAACUAGUCAAAAUCCACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008668946.2	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||| targets:2327   AAUCCAUAACAAGUCAAAAUCCAC   2350 Target Full Sequence	2.0	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||| targets:1215   AAUCCAUAACAAGUCAAAAUCCAC   1238 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||| targets:1215   AAUCCAUAACAAGUCAAAAUCCAC   1238 Target Full Sequence	2.0	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
EU941886.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||| targets:117   AAUCCAUAACAAGUCAAAAUCCAC   140 Target Full Sequence	2.0	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
JB169265.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||| targets:37   AAUCCAUAACAAGUCAAAAUCCAC   60 Target Full Sequence	2.0	Sequence 6929 from Patent EP2559767	NA	coding protein	psRNATarget
HI408804.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||| targets:37   AAUCCAUAACAAGUCAAAAUCCAC   60 Target Full Sequence	2.0	Sequence 6929 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240934.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||| targets:37   AAUCCAUAACAAGUCAAAAUCCAC   60 Target Full Sequence	2.0	Sequence 6929 from Patent EP2985353	NA	coding protein	psRNATarget
BT016884.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||= targets:222   AAUCCAUAACAAGUCAAAAUCCAU   245 Target Full Sequence	3.0	Zea mays clone Contig717 mRNA sequence	NA	coding protein	psRNATarget
BT062534.2	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||= targets:41   AAUCCAUAACAAGUCAAAAUCCAU   64 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310N08 mRNA, complete cds	NA	coding protein	psRNATarget
AY112306.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||= targets:78   AAUCCAUAACAAGUCAAAAUCCAU   101 Target Full Sequence	3.0	Zea mays CL30631_-1 mRNA sequence	NA	coding protein	psRNATarget
EZ066328.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   ||||||=|||*||||||||||||= targets:40   AAUCCAUAACAAGUCAAAAUCCAU   63 Target Full Sequence	3.0	TSA: Zea mays contig01962, mRNA sequence	NA	coding protein	psRNATarget
XM_020545843.1	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   |||=||*|||*||||||||||||* targets:1304   AAUUCAGAACGAGUCAAAAUCCAA   1327 Target Full Sequence	3.0	PREDICTED: Zea mays U-box domain-containing protein 7 (LOC103641784), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665115.2	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   |||=||*|||*||||||||||||* targets:622   AAUUCAGAACGAGUCAAAAUCCAA   645 Target Full Sequence	3.0	PREDICTED: Zea mays U-box domain-containing protein 7 (LOC103641784), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008665116.2	ncRNA:24   UUAGGUGUUGAUCAGUUUUAGGUG   1   |||=||*|||*||||||||||||* targets:433   AAUUCAGAACGAGUCAAAAUCCAA   456 Target Full Sequence	3.0	PREDICTED: Zea mays U-box domain-containing protein 7 (LOC103641784), transcript variant X3, mRNA	NA	coding protein	psRNATarget