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BaseInfo

ncRNA ID	novel_zma_miR15180
Species	Zea mays
Class	miRNA
Genome position	Chr8:104667245-104667402 [+]
Reference genome	RefGen_v4
Source	SRR2089707
Length	24
Mature sequence(if miRNA)	135 - ACUGUUUGUAUAGUGUAGUUUGAA - 158
Stem-loop(if miRNA)	--           C                       C   ----------   A      G   G         AUACAA  U   CAAACUAUACU UACAAACAGUGCAAUAUACAGUG AAA          ACA UGUUUU GGU GCCAUAUGG      UG A   ||||||||||| ||||||||||||||||||||||| |||          ||| |||||| ||| |||||||||      || C   GUUUGAUGUGA AUGUUUGUCACGUUGUAUGUUAC UUU          UGU ACAAAA CCA UGGUAUACC      AC A AA           U                       A   UACCACAUUC   C      A   G         -ACUUG  U
Stem-loop sequence	CAAACUAUACUCUACAAACAGUGCAAUAUACAGUGCAAAACAAUGUUUUGGGUGGCCAUAUGGAUACAAUGUACAUCAGUUCACCAUAUGGUGACCAAAAACACUGUCUUACACCAUUUUACAUUGUAUGUUGCACUGUUUGUAUAGUGUAGUUUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT086112.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   ||||||*||||||*|||||||||| targets:1887   UUCAAAGUACACUCUACAAACAGU   1910 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0117E24 mRNA, complete cds	NA	coding protein	psRNATarget
BT067480.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   ||=|||||*||||*|||||||||| targets:1233   UUUAAACUUCACUCUACAAACAGU   1256 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0063K12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149242.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   ||=|||||*||||*|||||||||| targets:1233   UUUAAACUUCACUCUACAAACAGU   1256 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100275042), mRNA	NA	coding protein	psRNATarget
AY111263.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   ||*|||=||||||*|||||||||| targets:483   UUAAAAUUACACUCUACAAACAGU   506 Target Full Sequence	2.5	Zea mays CL8731_1 mRNA sequence	NA	coding protein	psRNATarget
EZ091653.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   ||=|||||*|*||||||||||||| targets:83   UUUAAACUUCUCUAUACAAACAGU   106 Target Full Sequence	2.0	TSA: Zea mays contig27302, mRNA sequence	NA	coding protein	psRNATarget
EU966417.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   *|||||||*||||*|||||||||| targets:449   CUCAAACUUCACUCUACAAACAGU   472 Target Full Sequence	2.5	Zea mays clone 294325 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB166947.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   *|||||||*||||*|||||||||| targets:127   CUCAAACUUCACUCUACAAACAGU   150 Target Full Sequence	2.5	Sequence 4611 from Patent EP2559767	NA	coding protein	psRNATarget
HI406486.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   *|||||||*||||*|||||||||| targets:127   CUCAAACUUCACUCUACAAACAGU   150 Target Full Sequence	2.5	Sequence 4611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238616.1	ncRNA:24   AAGUUUGAUGUGAUAUGUUUGUCA   1   *|||||||*||||*|||||||||| targets:127   CUCAAACUUCACUCUACAAACAGU   150 Target Full Sequence	2.5	Sequence 4611 from Patent EP2985353	NA	coding protein	psRNATarget