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BaseInfo

ncRNA ID	novel_zma_miR15161
Species	Zea mays
Class	miRNA
Genome position	Chr9:81445430-81445544 [-]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	92 - UUGAUUUGGUGACAAAGGGAUCCC - 115
Stem-loop(if miRNA)	--             AAA                  C                   AA   UUGAUUUGGUGAC   GGGAUCCCGGGAGGAUUG AGGGGAUUGAGGGGGAAAU  A   |||||||||||||   |||||||||||||||||| |||||||||||||||||||   GACUAAACCACUG   CCCUAGGGCCCUCCUAAC UCCCCUAACUCCCCCUUUA  C CC             -GG                  C                   AU
Stem-loop sequence	UUGAUUUGGUGACAAAGGGAUCCCGGGAGGAUUGCAGGGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCCGGGAUCCCGGGUCACCAAAUCAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||| targets:104   GGGAUCCCCUUGUCACCAAAUCAA   127 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||| targets:112   GGGAUCCCCUUGUCACCAAAUCAA   135 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||| targets:1497   GGGAUCCCCUUGUCACCAAAUCAA   1520 Target Full Sequence	1.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	2.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	2.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	2.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||= targets:848   GGGAUCCCCUUGUCACCAAAUCAG   871 Target Full Sequence	2.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||= targets:887   GGGAUCCCCUUGUCACCAAAUCAG   910 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||= targets:892   GGGAUCCCCUUGUCACCAAAUCAG   915 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ||||||||*||||||||||||||= targets:892   GGGAUCCCCUUGUCACCAAAUCAG   915 Target Full Sequence	2.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   |*||||||*||||||||||||||| targets:298   GUGAUCCCCUUGUCACCAAAUCAA   321 Target Full Sequence	1.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   |*||||||*||||||||||||*|| targets:401   GUGAUCCCCUUGUCACCAAAUGAA   424 Target Full Sequence	2.5	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   |*|||||**||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   |*|||||**||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   |*|||||**||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EU972859.1	ncRNA:24   CCCUAGGGAAACAGUGGUUUAGUU   1   ****||||||||||||||||||** targets:5   CUCUUCCCUUUGUCACCAAAUCUC   28 Target Full Sequence	2.5	Zea mays clone 389166 ATP binding protein mRNA, complete cds	NA	coding protein	psRNATarget