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BaseInfo

ncRNA ID novel_zma_miR15126
Species Zea mays
Class miRNA
Genome position Chr5:9975256-9975427 [+]
Reference genome RefGen_v4
Source SRR2089707
Length 24
Mature sequence(if miRNA) 149 - CUUAUAUAGUGGGACGGAGGGAGU - 172
Stem-loop(if miRNA) --             GG                     UA   UU UC   C  UAUAAGGCGU   C C       AUAC    A
  UCCCUCCGUCUCA  AUAUAAGGCGUAACCACUUUU  UUC  G  CCA GA          GCU U UCUAUAU    GUAU U
  |||||||||||||  |||||||||||||||||||||  |||  |  ||| ||          ||| | |||||||    ||||
  AGGGAGGCAGGGU  UAUAUUCCGUGUUGGUGGAGG  AAG  U  GGU CU          UGA A AGAUAUG    CGUA C
UG             GA                     CC   UU CU   U  UUACAUAAAU   C C       GUAA    G
Stem-loop sequence UCCCUCCGUCUCAGGAUAUAAGGCGUAACCACUUUUUAUUCUUGUCCCACGAUAUAAGGCGUGCUCUCUCUAUAUAUACGUAUAUCGAUGCAAUGGUAUAGACACAGUUAAAUACAUUUCUUGGUCUUUGAACCGGAGGUGGUUGUGCCUUAUAUAGUGGGACGGAGGGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU974289.1
ncRNA:24   UGAGGGAGGCAGGGUGAUAUAUUC   1
  |||||||||||||||*||||||||
targets:194   ACUCCCUCCGUCCCAGUAUAUAAG   217

1.5 Zea mays clone 445101 mRNA sequence NA coding protein psRNATarget
XM_020546407.1
ncRNA:24   UGAGGGAGGCAGGGUGAUAUAUUC   1
  |||||||=|||||||*||||||||
targets:779   ACUCCCUUCGUCCCAGUAUAUAAG   802

2.5 PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109943429), mRNA NA coding protein psRNATarget