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BaseInfo

ncRNA ID	novel_zma_miR15111
Species	Zea mays
Class	miRNA
Genome position	Chr5:161356059-161356113 [+]
Reference genome	RefGen_v4
Source	SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AUGGGCGCACCGGACAGUCUGGUA - 24
Stem-loop(if miRNA)	--AUG        G    --       A      GGCGCACC GACA  GUCUGGU C      |||||||| ||||  ||||||| G      CCGCGUGG CUGU  CAGGCCA C ACCGA        A    CA       C
Stem-loop sequence	AUGGGCGCACCGGACAGUCUGGUACGCCACCGGACACUGUCAGGUGCGCCAGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU959991.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *|||=||||||||||||=|||||| targets:704   CACCGGACUGUCCGGUGUGCCCAU   727 Target Full Sequence	1.5	Zea mays clone 221041 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663618.2	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *|||=||||||||||||=|||||| targets:790   CACCGGACUGUCCGGUGUGCCCAU   813 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA	NA	coding protein	psRNATarget
EZ079086.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGG-UA   1   *|||=|||||||||||||||||-|| targets:58   CACCGGACUGUCCGGUGCGCCCGAU   82 Target Full Sequence	3.0	TSA: Zea mays contig14725, mRNA sequence	NA	coding protein	psRNATarget
EU952168.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *||==|||||||=||||||||||| targets:596   CACUGGACUGUCUGGUGCGCCCAU   619 Target Full Sequence	1.5	Zea mays clone 1215356 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ049532.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *|||=|||||||||||||||||=* targets:57   CACCGGACUGUCCGGUGCGCCCGA   80 Target Full Sequence	2.5	TSA: Zea mays contig50650, mRNA sequence	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGG-UA   1   *|||=|||||||||||||||||-|| targets:421   CACCGGACUGUCCGGUGCGCCCGAU   445 Target Full Sequence	3.0	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
BT018479.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *|||=|||||||||||||||||=* targets:52   CACCGGACUGUCCGGUGCGCCCGA   75 Target Full Sequence	2.5	Zea mays clone EL01N0424B06.d mRNA sequence	NA	coding protein	psRNATarget
EU964336.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *|||=|||||||||||||||||=* targets:578   CACCGGACUGUCCGGUGCGCCCGA   601 Target Full Sequence	2.5	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
LQ242124.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *||||||||||||||||||||*|* targets:11   CACCAGACUGUCCGGUGCGCCAAC   34 Target Full Sequence	2.5	Sequence 8119 from Patent EP2985353	NA	coding protein	psRNATarget
JB170455.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *||||||||||||||||||||*|* targets:11   CACCAGACUGUCCGGUGCGCCAAC   34 Target Full Sequence	2.5	Sequence 8119 from Patent EP2559767	NA	coding protein	psRNATarget
HI409994.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *||||||||||||||||||||*|* targets:11   CACCAGACUGUCCGGUGCGCCAAC   34 Target Full Sequence	2.5	Sequence 8119 from Patent EP2074227	NA	coding protein	psRNATarget
EU952213.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *|=|=||||*|||||||||||||| targets:314   CAUCGGACUCUCCGGUGCGCCCAU   337 Target Full Sequence	1.0	Zea mays clone 1226497 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036301.1	ncRNA:24   AUGGUCUGACAGGCCACGCGGGUA   1   *|||=||||||||||||||||*|* targets:913   CACCGGACUGUCCGGUGCGCCAAC   936 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget