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BaseInfo

ncRNA ID osa-miRf11108-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UUUCCGUGCGGUCCUCUUAA - NA
Stem-loop(if miRNA)   G       A        G             A        --------   C G
GC GUCCAUU AAGAGGAC GCACGGAAAAAUC AUUUUUCC        GUG G U
|| ||||||| |||||||| ||||||||||||| ||||||||        ||| |
CG CAGGUAA UUCUCCUG CGUGCCUUUUUAG UAAAAAGG        UAC C A
  A       A        G             C        GUCUUCUU   U A
Stem-loop sequence GCGGUCCAUUAAAGAGGACGGCACGGAAAAAUCAAUUUUUCCGUGCGGUAACUCAUUUCUUCUGGGAAAAAUCGAUUUUUCCGUGCGGUCCUCUUAAAUGGACAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI404453.1
ncRNA:20   AAUUCUCCUGGCGUGCCUUU   1
  |||||*||||||||||||||
targets:16   UUAAGUGGACCGCACGGAAA   35

1.0 Sequence 2578 from Patent EP2074227 NA coding protein psRNATarget
JB164914.1
ncRNA:20   AAUUCUCCUGGCGUGCCUUU   1
  |||||*||||||||||||||
targets:16   UUAAGUGGACCGCACGGAAA   35

1.0 Sequence 2578 from Patent EP2559767 NA coding protein psRNATarget
LQ236583.1
ncRNA:20   AAUUCUCCUGGCGUGCCUUU   1
  |||||*||||||||||||||
targets:16   UUAAGUGGACCGCACGGAAA   35

1.0 Sequence 2578 from Patent EP2985353 NA coding protein psRNATarget
AK288501.1
ncRNA:20   AAUUCUCCUGGCGUGCCUUU   1
  |||||*||||||||||*|||
targets:1952   UUAAGUGGACCGCACGCAAA   1971

2.5 Oryza sativa Japonica Group cDNA, clone: J090041C22, full insert sequence NA coding protein psRNATarget
CT835681.1
ncRNA:20   AAUUCUCCUGGCGUGCCUUU   1
  ||||***|||||||||||||
targets:510   UUAACCCGACCGCACGGAAA   529

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA033C01, full insert sequence NA coding protein psRNATarget