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BaseInfo

ncRNA ID novel_zma_miR15108
Species Zea mays
Class miRNA
Genome position Chr4:58232294-58232372 [+]
Reference genome RefGen_v4
Source SRR2089707
Length 24
Mature sequence(if miRNA) 1 - UGCAGAGUGAAUGGAACGGAGCGU - 24
Stem-loop(if miRNA) ----UGC     G             -  GA    -GA  GC
       AGAGU AAUGGAACGGAGC GU  CUGU   GA  G
       ||||| ||||||||||||| ||  ||||   ||
       UUUUA UUACCUUGCCUCG CG  GGCA   UU  G
CGAGGUU     G             G  -A    AGG  AG
Stem-loop sequence UGCAGAGUGAAUGGAACGGAGCGUGACUGUGAGAGCGGGAUUGGAACGGAGCGGCUCCGUUCCAUUGAUUUUUUGGAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542520.1
ncRNA:24   UGCGAGGCAAGGUAAGUGAGACGU   1
  |||||||*||||=|||||||||||
targets:1660   ACGCUCCAUUCCGUUCACUCUGCA   1683

2.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 38 (LOC100502147), transcript variant X2, mRNA NA coding protein psRNATarget