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BaseInfo

ncRNA ID novel_zma_miR15100
Species Zea mays
Class miRNA
Genome position Chr10:69902489-69902668 [-]
Reference genome RefGen_v4
Source SRR1583941
Length 21
Mature sequence(if miRNA) 1 - CACAUCCGGACAGAGUACACU - 21
Stem-loop(if miRNA) --      A                                             G                    G  G  G       U
  UGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G
  |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||
  ACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGGGCUGAAGUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A
UC      G                                             G                    A  G  G       U
Stem-loop sequence UGUACUAUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUUCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGUCGGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAGAGUACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:21   UCACAUGAGACAGGCCUACAC   1
  =|||||||||||||||||||*
targets:3223   GGUGUACUCUGUCCGGAUGUC   3243

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:21   UCACAUGAGACAGGCCUACAC   1
  =|||||||||||||||||||*
targets:3361   GGUGUACUCUGUCCGGAUGUC   3381

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget