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BaseInfo

ncRNA ID	novel_zma_miR15066
Species	Zea mays
Class	miRNA
Genome position	Chr7:173366724-173366838 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	1 - AUCUAAUGUCUCUAGUUGAUCAUU - 24
Stem-loop(if miRNA)	--                  AUCAUUCA    -ACAAAUA          C ACUACA   AUCUAAUGUCUCUAGUUG        AUUU        ACACCUUCCA C      C   ||||||||||||||||||        ||||        |||||||||| |   UAGAUUGCAGAGAUCAAC        UAAA        UGUGGGAGGU G      A UC                  AAACCAUA    ACGAUUCC          U CACCAC
Stem-loop sequence	AUCUAAUGUCUCUAGUUGAUCAUUCAAUUUACAAAUAACACCUUCCACCACUACACACACCACGUUGGAGGGUGUCCUUAGCAAAAUAUACCAAACAACUAGAGACGUUAGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT087210.1	ncRNA:24   UUACUAGUUGAUCUCUGUAAUCUA   1   |||||||||||||||||||||||| targets:443   AAUGAUCAACUAGAGACAUUAGAU   466 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   UUACUAGUUGAUCUCUGUAAUCUA   1   |||||||||=|||||||=|||||| targets:117   AAUGAUCAAUUAGAGACGUUAGAU   140 Target Full Sequence	2.5	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   UUACUAGUUGAUCUCUGUAAUCUA   1   |||||||||=|||||||=|||||| targets:117   AAUGAUCAAUUAGAGACGUUAGAU   140 Target Full Sequence	2.5	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   UUACUAGUUGAUCUCUGUAAUCUA   1   |||||||||=|||||||=|||||| targets:117   AAUGAUCAAUUAGAGACGUUAGAU   140 Target Full Sequence	2.5	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008681116.2	ncRNA:24   UUACUAGUUGAUCUCUGUAAUCUA   1   |||*|||||||||||||=|||||| targets:3241   AAUAAUCAACUAGAGACGUUAGAU   3264 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552764.1	ncRNA:24   UUACUAGUUGAUCUCUGUAAUCUA   1   |||*|||||||||||||=|||||| targets:3063   AAUAAUCAACUAGAGACGUUAGAU   3086 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ092927.1	ncRNA:24   UUACUAGUUGAUCUCUGUAAUCUA   1   ||*|||||||*||||||=|||||| targets:75   AAAGAUCAACCAGAGACGUUAGAU   98 Target Full Sequence	2.5	TSA: Zea mays contig28576, mRNA sequence	NA	coding protein	psRNATarget
XM_008654898.2	ncRNA:24   UUAC-----UAGUUGAUCUCUGUAAUCUA   1   ||||-----|*|||||||||||=|||||| targets:101   AAUGUACCAAACAACUAGAGACGUUAGAU   129 Target Full Sequence	2.5	PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA	NA	coding protein	psRNATarget