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BaseInfo

ncRNA ID	novel_zma_miR15051
Species	Zea mays
Class	miRNA
Genome position	Chr2:33697765-33697856 [+]
Reference genome	RefGen_v4
Source	SRR2089706
Length	24
Mature sequence(if miRNA)	1 - AAUCCAGAGGGGGAUUGGAGGGGA - 24
Stem-loop(if miRNA)	--                       A          U A      A   AAUCCAGAGGGGGAUUGGAGGGG UUAAAUCCCC C UAGUCA A   ||||||||||||||||||||||| |||||||||| | ||||||   UUAGGUCUCCCCCUAACUUCCCC AAUUUAGGGG G AUCAGU A GG                       A          U G      A
Stem-loop sequence	AAUCCAGAGGGGGAUUGGAGGGGAUUAAAUCCCCUCAUAGUCAAAAAUGACUAGGUGGGGAUUUAAACCCCUUCAAUCCCCCUCUGGAUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ049235.1	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   ||||||=||||||||=|||||||| targets:1   UCCCCUUCAAUCCCCUUCUGGAUU   24 Target Full Sequence	2.5	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   *||||||||||||||||||||||| targets:1604   ACCCCUCCAAUCCCCCUCUGGAUU   1627 Target Full Sequence	0.0	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   *||||||||||||||*|||||||| targets:84   ACCCCUCCAAUCCCCAUCUGGAUU   107 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   *||||||||||||||*|||||||| targets:84   ACCCCUCCAAUCCCCAUCUGGAUU   107 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   *||||||||||||||*|||||||| targets:84   ACCCCUCCAAUCCCCAUCUGGAUU   107 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   *||=|||=|||||||=|||||||| targets:4798   ACCUCUCUAAUCCCCUUCUGGAUU   4821 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   *||=|||=|||||||=|||||||| targets:5025   ACCUCUCUAAUCCCCUUCUGGAUU   5048 Target Full Sequence	2.5	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957179.1	ncRNA:24   AGGGGAGGUUAGGGGGAGACCUAA   1   **|*|||||||||||||||||||* targets:1564   GGCACUCCAAUCCCCCUCUGGAUC   1587 Target Full Sequence	1.0	Zea mays clone 1584995 mRNA sequence	NA	coding protein	psRNATarget