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BaseInfo

ncRNA ID novel_zma_miR15043
Species Zea mays
Class miRNA
Genome position Chr2:190806963-190807028 [+]
Reference genome RefGen_v4
Source SRR2089706
Length 24
Mature sequence(if miRNA) 1 - CAGAUUUUUAUCGUUUGGCUCGGC - 24
Stem-loop(if miRNA) --    -       C    G    GGCA    U
  CAGA UUUUUAU GUUU GCUC    GGAG G
  |||| ||||||| |||| ||||    |||| A
  GUCU GAGAGUG CGAG CGAG    CCUC U
CU    C       U    G    AAUC    U
Stem-loop sequence CAGAUUUUUAUCGUUUGGCUCGGCAGGAGUGAUUCUCCCUAAGAGCGGAGCUGUGAGAGCUCUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008660099.2
ncRNA:24   CGG-CUCGGUUUGCUAUUUUUAGAC   1
  *||-|||||||*|*|||||||||||
targets:69   CCCAGAGCCAAUCAAUAAAAAUCUG   93

2.5 PREDICTED: Zea mays metalloendoproteinase 1-MMP (LOC103637649), mRNA NA coding protein psRNATarget