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BaseInfo

ncRNA ID novel_zma_miR15042
Species Zea mays
Class miRNA
Genome position Chr7:107895119-107895330 [-]
Reference genome RefGen_v4
Source SRR1583943
Length 23
Mature sequence(if miRNA) 190 - GGCUUGUUCGUUUACGUCGGAUU - 212
Stem-loop(if miRNA) --                            C                                                                      G  CC
  GGCUUGUUCGUUUACGUCGGAUUGCACC GGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAAUUAGAGAAACAAUCCGGCUAGGAAUCGUUCCGACCCA UA  G
  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
  CCGAACAAGCAAAUGCAGCCUAACGUGG CCUUAGCAAGGUCGAUUAGUUUCAAAUAUAUUUAAUCUCUUUGUUAGGCCGAUCCUUAGCAAGGCUGGGU GU  G
UC                            A                                                                      G  UA
Stem-loop sequence GGCUUGUUCGUUUACGUCGGAUUGCACCCGGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAAUUAGAGAAACAAUCCGGCUAGGAAUCGUUCCGACCCAGUACCGGAUUGGUGGGUCGGAACGAUUCCUAGCCGGAUUGUUUCUCUAAUUUAUAUAAACUUUGAUUAGCUGGAACGAUUCCAGGUGCAAUCCGACGUAAACGAACAAGCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ056395.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  |||||||||||||||||||||||
targets:137   AAUCCGACGUAAACGAACAAGCC   159

0.0 TSA: Zea mays contig57517, mRNA sequence NA coding protein psRNATarget
HI405951.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:110   AAUCCGACGUAAACGAACAAGGCC   133

3.0 Sequence 4076 from Patent EP2074227 NA coding protein psRNATarget
JB166412.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:110   AAUCCGACGUAAACGAACAAGGCC   133

3.0 Sequence 4076 from Patent EP2559767 NA coding protein psRNATarget
LQ238081.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:110   AAUCCGACGUAAACGAACAAGGCC   133

3.0 Sequence 4076 from Patent EP2985353 NA coding protein psRNATarget
LQ238027.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:115   AAUCCGACGUAAACGAACAAGGCC   138

3.0 Sequence 4022 from Patent EP2985353 NA coding protein psRNATarget
JB166358.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:115   AAUCCGACGUAAACGAACAAGGCC   138

3.0 Sequence 4022 from Patent EP2559767 NA coding protein psRNATarget
HI405897.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:115   AAUCCGACGUAAACGAACAAGGCC   138

3.0 Sequence 4022 from Patent EP2074227 NA coding protein psRNATarget
XM_020542682.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUU-CGG   1
  ||||||||||||||||||||-|||
targets:946   AAUCCGACGUAAACGAACAAUGCC   969

3.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUU-CGG   1
  ||||||||||||||||||||-|||
targets:1041   AAUCCGACGUAAACGAACAAUGCC   1064

3.0 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008653755.2
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:432   AAUCCGACGUAAACGAACAAGGCC   455

3.0 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020541330.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:514   AAUCCGACGUAAACGAACAAGGCC   537

3.0 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008653754.2
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:696   AAUCCGACGUAAACGAACAAGGCC   719

3.0 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008653753.2
ncRNA:23   UUAGGCUGCAUUUGCUUGUUC-GG   1
  |||||||||||||||||||||-||
targets:898   AAUCCGACGUAAACGAACAAGGCC   921

3.0 PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238037.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  |||||||||*|||||||||||||
targets:114   AAUCCGACGCAAACGAACAAGCC   136

1.0 Sequence 4032 from Patent EP2985353 NA coding protein psRNATarget
HI405907.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  |||||||||*|||||||||||||
targets:114   AAUCCGACGCAAACGAACAAGCC   136

1.0 Sequence 4032 from Patent EP2074227 NA coding protein psRNATarget
JB166368.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  |||||||||*|||||||||||||
targets:114   AAUCCGACGCAAACGAACAAGCC   136

1.0 Sequence 4032 from Patent EP2559767 NA coding protein psRNATarget
BT019200.1
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  |||||||||*|||||||||||||
targets:1044   AAUCCGACGCAAACGAACAAGCC   1066

1.0 Zea mays clone Contig873.F mRNA sequence NA coding protein psRNATarget
XM_008647453.2
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  |||||||||*|||||||||||||
targets:3373   AAUCCGACGCAAACGAACAAGCC   3395

1.0 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647452.2
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  |||||||||*|||||||||||||
targets:3361   AAUCCGACGCAAACGAACAAGCC   3383

1.0 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008645519.2
ncRNA:23   UUAGGCUGCAUUUGCUUGUUCGG   1
  =||||||||*||||||||||*||
targets:1   GAUCCGACGCAAACGAACAAUCC   23

2.5 PREDICTED: Zea mays N-acetyltransferase (cl33241_1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645517.2
ncRNA:21   AGGCUGCAUUUGCUUGUUCGG   1
  |||||||*||||||||||*||
targets:1   UCCGACGCAAACGAACAAUCC   21

2.5 PREDICTED: Zea mays N-acetyltransferase (cl33241_1), transcript variant X1, mRNA NA coding protein psRNATarget
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